View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1904_low_25 (Length: 274)
Name: NF1904_low_25
Description: NF1904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1904_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 10 - 239
Target Start/End: Complemental strand, 37146612 - 37146384
Alignment:
| Q |
10 |
attgagttgcgactaaaataaccaatctaattgtgtcatgtgtatacactggagcaaatacctcttcataatcaaccccatattcttgcttatagcctta |
109 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||| ||| ||| | |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37146612 |
attgagttgcgactgaaataaccaatcta-ttgtgtcatgtctatccaccgtagcaaatacctctttataatcaaccccatattcttgcttatagccttt |
37146514 |
T |
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| Q |
110 |
aactaccggtcaagccttgtatttatccaccttaccatctgcattgagcattgtcatatacacttgttttactccaatagatttctgtccttctggaaga |
209 |
Q |
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|||||| | | ||||||||||||| |||| |||||||||||||||||| ||| | ||||||| ||||||| |||||||||||||||||| | ||||||| |
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| T |
37146513 |
aactactagccgagccttgtatttacccacgttaccatctgcattgagctttggcttatacacctgttttaatccaatagatttctgtccctttggaaga |
37146414 |
T |
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| Q |
210 |
tttgttaattcccaaatgttgtttttctct |
239 |
Q |
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||||||||||||||| |||||||||||||| |
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| T |
37146413 |
tttgttaattcccaagtgttgtttttctct |
37146384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 7e-55; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 144514 - 144286
Alignment:
| Q |
11 |
ttgagttgcgactaaaataaccaatctaattgtgtcatgtgtatacactggagcaaatacctcttcataatcaaccccatattcttgcttatagccttaa |
110 |
Q |
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||||| ||||||| ||||||||||||||||||||||| | | ||| ||||||||||||||| |||||| ||||| ||||| ||||||||||||| | |
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| T |
144514 |
ttgagctgcgactgaaataaccaatctaattgtgtcaaggcgagccaccagagcaaatacctctttataatcgaccccgtattcctgcttatagccttta |
144415 |
T |
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| Q |
111 |
actaccggtcaagccttgtatttatccaccttaccatctgcattgagcattgtcatatacacttgttttactccaatagatttctgtccttctggaagat |
210 |
Q |
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| T |
144414 |
actactagtcgagccttgtatttatccaccttaccatctgcattgagctttgtcttatacacccactttactccaatagatttctgcccctttggtagat |
144315 |
T |
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| Q |
211 |
ttgttaattcccaaatgttgtttttctct |
239 |
Q |
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| T |
144314 |
ttgttaattcccatgtgttgtttttctct |
144286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 152535 - 152307
Alignment:
| Q |
11 |
ttgagttgcgactaaaataaccaatctaattgtgtcatgtgtatacactggagcaaatacctcttcataatcaaccccatattcttgcttatagccttaa |
110 |
Q |
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||||| ||||||| ||||||||||||||||||||||| | | ||| ||||||||||||||| |||||| ||||| ||||| ||||||||||||| | |
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| T |
152535 |
ttgagctgcgactgaaataaccaatctaattgtgtcaaggcgagccaccagagcaaatacctctttataatcgaccccgtattcctgcttatagccttta |
152436 |
T |
|
| Q |
111 |
actaccggtcaagccttgtatttatccaccttaccatctgcattgagcattgtcatatacacttgttttactccaatagatttctgtccttctggaagat |
210 |
Q |
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| T |
152435 |
actactagtcgagccttgtatttatccaccttaccatctgcattgagctttgtcttatacacccactttactccaatagatttctgcccctttggtagat |
152336 |
T |
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| Q |
211 |
ttgttaattcccaaatgttgtttttctct |
239 |
Q |
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||||||||||||| |||||||||||||| |
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| T |
152335 |
ttgttaattcccatgtgttgtttttctct |
152307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 116
Target Start/End: Complemental strand, 28005732 - 28005627
Alignment:
| Q |
11 |
ttgagttgcgactaaaataaccaatctaattgtgtcatgtgtatacactggagcaaatacctcttcataatcaaccccatattcttgcttatagccttaa |
110 |
Q |
| |
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|||||||||| || ||||||||||| ||||||||||| || || ||| |||||| ||||||||| ||| |||||||||||||||||||||||||||| | |
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| T |
28005732 |
ttgagttgcggctgaaataaccaatataattgtgtcaagtatagccaccggagcatatacctctttatagtcaaccccatattcttgcttatagccttta |
28005633 |
T |
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| Q |
111 |
actacc |
116 |
Q |
| |
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|||||| |
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| T |
28005632 |
actacc |
28005627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 27924726 - 27924654
Alignment:
| Q |
65 |
aaatacctcttcataatcaaccccatattcttgcttatagccttaaactaccggtcaagccttgtatttatcc |
137 |
Q |
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||||| ||||| ||||||||||||||| |||||||||||||||| ||||||| | | |||||||||||||||| |
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| T |
27924726 |
aaataactctttataatcaaccccatactcttgcttatagcctttaactaccagcctagccttgtatttatcc |
27924654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 24326698 - 24326473
Alignment:
| Q |
11 |
ttgagttgcgactaaaataaccaatctaattgtgtcatgtgtatacactggagcaaatacctcttcataatcaaccccatattcttgcttatagccttaa |
110 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||| | | ||| |||||||||||||||| |||||| ||||| ||||| |||||||| |||| | |
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| T |
24326698 |
ttgagctgcgactgaaataaccaatctaattgtgtcaaggcgagccaccggagcaaatacctctttataatcgaccccgtattcctgcttatacccttta |
24326599 |
T |
|
| Q |
111 |
actaccggtcaagccttgtatttatccaccttaccatctgcattgagcattgtcatatacacttgttttactccaatagatttctgtccttctggaagat |
210 |
Q |
| |
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|||||| ||| |||||| |||||||||||||||||||||||||||||| ||||| |||| || |||||||||||||||||||| || | |||||||| |
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| T |
24326598 |
actaccagtcgagccttatatttatccaccttaccatctgcattgagctttgtcttataaacccactttactccaatagatttctgcccctttggaagat |
24326499 |
T |
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| Q |
211 |
ttgttaattcccaaatgttgtttttc |
236 |
Q |
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||||||||||||| ||||||||||| |
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| T |
24326498 |
ttgttaattcccatgtgttgtttttc |
24326473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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