View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1904_low_29 (Length: 246)
Name: NF1904_low_29
Description: NF1904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1904_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 52340209 - 52340426
Alignment:
| Q |
12 |
attattctcatcaatattttatagtttaatggacatgcatgggtatgatactaatatgtaccatctatgattaaatttataaaaatgcccacgacaatga |
111 |
Q |
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| T |
52340209 |
attattattatcaatattttatagtttaatggacatgcatgggtatgatactaatatgtaccatctatgattaaatttataaaattgcccatgacaatga |
52340308 |
T |
|
| Q |
112 |
gagaggtatctacctgtaacaatgtccatgaagaagggaacggattctgttaacttgtgaggaggtttacccttccatttcgccgcaagatatggaatag |
211 |
Q |
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| T |
52340309 |
gagaggtatctacctgtaacaatgtccatgaagaagggaacggattctgttaacttgtgaggaggtttacccttccatttcgccgcaagatatggaatag |
52340408 |
T |
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| Q |
212 |
cgatgtcttgcaaataaa |
229 |
Q |
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|||||||||||||||||| |
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| T |
52340409 |
cgatgtcttgcaaataaa |
52340426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 9184402 - 9184619
Alignment:
| Q |
12 |
attattctcatcaatattttatagtttaatggacatgcatgggtatgatactaatatgtaccatctatgattaaatttataaaaatgcccacgacaatga |
111 |
Q |
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| T |
9184402 |
attattattatcaatattttatagtttaatggacatgcatgggtatgatactaatatgtaccatctatgattaaatttataaaaatgcccatgacaatta |
9184501 |
T |
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| Q |
112 |
gagaggtatctacctgtaacaatgtccatgaagaagggaacggattctgttaacttgtgaggaggtttacccttccatttcgccgcaagatatggaatag |
211 |
Q |
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| T |
9184502 |
gagaggtatccacctgtaacaatgtccaagaagaagggaacggattctgttaacttgtgaggaggtttacccttccatttcgcggcaagatatggaatag |
9184601 |
T |
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| Q |
212 |
cgatgtcttgcaaataaa |
229 |
Q |
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| T |
9184602 |
cgatgtcctgcaaataaa |
9184619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 9180917 - 9181024
Alignment:
| Q |
122 |
tacctgtaacaatgtccatgaagaagggaacggattctgttaacttgtgaggaggtttacccttccatttcgccgcaagatatggaatagcgatgtcttg |
221 |
Q |
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|||||||||| ||||| ||||||||||||||| || ||||| | |||| || ||| ||||||||||| | ||||||||||||| |||||| || || |
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| T |
9180917 |
tacctgtaacgatgtctctgaagaagggaacggtatccgttaattcatgagcagatttggccttccatttctctgcaagatatggaacagcgatatcctg |
9181016 |
T |
|
| Q |
222 |
caaataaa |
229 |
Q |
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|||||||| |
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| T |
9181017 |
caaataaa |
9181024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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