View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1904_low_30 (Length: 242)
Name: NF1904_low_30
Description: NF1904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1904_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 63 - 223
Target Start/End: Complemental strand, 38197180 - 38197020
Alignment:
| Q |
63 |
ttgtatgagcacttttctgttaccaactactttgggggaggaaattcagagaatgattaattcattttggtgggggtcgaatagaagtcaaggtaaaggt |
162 |
Q |
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| T |
38197180 |
ttgtatgagcacttttctgttaccaactactttgggggaggaaattcagagaatgattaattcattttggtgggggtcgactagaagtcaaggtaaaggt |
38197081 |
T |
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| Q |
163 |
ataaactgcattaattgggacaaattgactatgagaaaggagtacggaggtatgagattca |
223 |
Q |
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| T |
38197080 |
ataaactggattaattgggacaaattgactatgagaaaggagtacggaggtatgggattca |
38197020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 38197196 - 38197263
Alignment:
| Q |
1 |
tgtgcaactgatttaattaacacttctcttcctgctttggataaatgcttacttgaccattgttgtat |
68 |
Q |
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| T |
38197196 |
tgtgcaactgatttaattaacacttctcttcctgctttggataaatgcttacccgaccattgttgtat |
38197263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 19024926 - 19024777
Alignment:
| Q |
67 |
atgagcacttttctgttaccaactactttgggggaggaaattcagagaatgattaattcattttggtgggggtcgaatagaagtcaaggtaaaggtataa |
166 |
Q |
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| T |
19024926 |
atgagcacttttctgctaccaacaactttgggagaagagatccagaggatgattaattctttttggtggggtttgaatatatggcaaggtagagggatta |
19024827 |
T |
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| Q |
167 |
actgcattaattgggacaaattgactatgagaaaggagtacggaggtatg |
216 |
Q |
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| T |
19024826 |
attggctcatttgggacaaactcacaatgcgaaaggagtacggaggtatg |
19024777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 212
Target Start/End: Original strand, 25499568 - 25499686
Alignment:
| Q |
94 |
ttgggggaggaaattcagagaatgattaattcattttggtgggggtcgaatagaagtcaaggtaaaggtataaactgcattaattgggacaaattgacta |
193 |
Q |
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| T |
25499568 |
ttgggagaggagattcaaagaatgattaattctttttggtggggatcaaataggaggcaaggtaaaggtatcaattggctttcttgggacaaattaacaa |
25499667 |
T |
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| Q |
194 |
tgagaaaggagtacggagg |
212 |
Q |
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| T |
25499668 |
tgcgtaaggagtatggagg |
25499686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 161
Target Start/End: Complemental strand, 6509660 - 6509562
Alignment:
| Q |
63 |
ttgtatgagcacttttctgttaccaactactttgggggaggaaattcagagaatgattaattcattttggtgggggtcgaatagaagtcaaggtaaagg |
161 |
Q |
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||||||||||||||| | |||||||| || ||||||||||| ||||| | ||||||||| || || |||||||| | |||||| || ||||| ||||| |
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| T |
6509660 |
ttgtatgagcactttcttattaccaacaacattgggggaggagattcaaataatgattaactctttctggtggggattgaataggaggcaaggcaaagg |
6509562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 157
Target Start/End: Complemental strand, 18978761 - 18978719
Alignment:
| Q |
115 |
atgattaattcattttggtgggggtcgaatagaagtcaaggta |
157 |
Q |
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| T |
18978761 |
atgattaattccttttggtggggttcgaatagaaggcaaggta |
18978719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 157
Target Start/End: Original strand, 34211348 - 34211390
Alignment:
| Q |
115 |
atgattaattcattttggtgggggtcgaatagaagtcaaggta |
157 |
Q |
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| T |
34211348 |
atgattaattccttttggtggggttcgaatagaaggcaaggta |
34211390 |
T |
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