View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1904_low_35 (Length: 221)
Name: NF1904_low_35
Description: NF1904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1904_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 37220639 - 37220827
Alignment:
| Q |
20 |
tatttataataggatttataaagtagttagaggtaaatacggagagtttttgttacttcacttnnnnnnnnntattgttgttacaatatactactagctg |
119 |
Q |
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| T |
37220639 |
tatttataataggatttataaagtagttagaggtaaatacggagagtttttgtaacttcacttaaaaaaatatattgttgttacaatatactactagctg |
37220738 |
T |
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| Q |
120 |
aatatcaaagatctaaaagataaagttgcaaccagctgaatatatcaaagatttaaaagataaagttcaatttgttcgcctttcatctc |
208 |
Q |
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| T |
37220739 |
aatatcaaagatctaaaagataaagttgaaaccagctgaatatatcaaagatttaaaagataaagttcaatttgttcgcctttcatctc |
37220827 |
T |
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