View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1904_low_37 (Length: 210)
Name: NF1904_low_37
Description: NF1904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1904_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 13009194 - 13009008
Alignment:
| Q |
13 |
acaacaacttttccccaagctctaccagtttcaatataaccaaatgcatcaatcacattctcaaaatcatattcaccttttggatcaatcactgctttca |
112 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
13009194 |
acaacaacttttccccaagctcttccagtttcaatgtaaccaaatgcatcaatcacattctcaaaatcatattcaccttttggatcaatcacagctttta |
13009095 |
T |
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| Q |
113 |
actctcctctttccaaatatggtctcagcttttccaatatttcacctgacactgtcaaacttgaataaactgcttttggatgtgatg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| || |||||||| |
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| T |
13009094 |
actctcctctttccaaatatggtctcagcttttccaatatttcaccacaaactgtcaaacttgaataaactgctctttcatgtgatg |
13009008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 13118252 - 13118438
Alignment:
| Q |
13 |
acaacaacttttccccaagctctaccagtttcaatataaccaaatgcatcaatcacattctcaaaatcatattcaccttttggatcaatcactgctttca |
112 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
13118252 |
acaacaactttaccccaagctcttccagtttcaatataaccaaatgcatcaatcacattctcaaaatcatattcaccttttggatcaatcacagctttta |
13118351 |
T |
|
| Q |
113 |
actctcctctttccaaatatggtctcagcttttccaatatttcacctgacactgtcaaacttgaataaactgcttttggatgtgatg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| || |||||||| |
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| T |
13118352 |
actctcctctttccaaatatggtctcagcttttccaatatttcaccacaaactgtcaaacttgaataaactgctctttcatgtgatg |
13118438 |
T |
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