View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1904_low_4 (Length: 461)
Name: NF1904_low_4
Description: NF1904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1904_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 218 - 456
Target Start/End: Original strand, 6291574 - 6291812
Alignment:
| Q |
218 |
ccttaaatttttaactctaagaattactataacttgtacaatatttagtactacttcattgattaatttgacattatatagatattggatactgttttgg |
317 |
Q |
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| T |
6291574 |
ccttaaatttttaactctaagaattactataacttgtacaatatttagtactaattcattgattaatttgaaattatatagatattggatactgttttgg |
6291673 |
T |
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| Q |
318 |
gatcaactatggtcaagttgctaacaatttgcctcaacctgaaaaagttcttgtactattaagcactctcaacctcacaaaaacaagaatctatgacaca |
417 |
Q |
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| T |
6291674 |
gatcaactatggtcaagttgctaacaatttgccacaacctgaaaaagttcttgtactattaagcactctcaacctcacaaaaacaagaatctatgacaca |
6291773 |
T |
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| Q |
418 |
aatcctcaacttcttagtacattttcaaaatccaatatt |
456 |
Q |
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| T |
6291774 |
aatcctcaaattctaagtacattttcaaaatcaaatatt |
6291812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 7 - 154
Target Start/End: Original strand, 6291363 - 6291510
Alignment:
| Q |
7 |
tccaagaatattaattcaaacaagaaaagaaaggaattctaatcctttcaacaatacctctatatctatatctatatattcccttccattttggtatcct |
106 |
Q |
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| T |
6291363 |
tccaaaaatattaattcaaacaagaaaagaaaggaattctaatcctttcaacaatacctctatatctatatctatatattcccttccattttggtatcct |
6291462 |
T |
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| Q |
107 |
agaatcttttgtcttccttcctcacaatgacaatattcatcacaacaa |
154 |
Q |
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| T |
6291463 |
agaatcttttctcttccttcctcacaatgacaatattcatcacaacaa |
6291510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 410
Target Start/End: Complemental strand, 32857160 - 32857063
Alignment:
| Q |
313 |
tttgggatcaactatggtcaagttgctaacaatttgcctcaacctgaaaaagttcttgtactattaagcactctcaacctcacaaaaacaagaatcta |
410 |
Q |
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||||| || |||||||| ||||| |||||||||||||| ||||| |||||||| || | ||| | ||||| | || ||||||||||||||||||| |
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| T |
32857160 |
tttggaataaactatggacaagtagctaacaatttgccacaaccagaaaaagtactagaacttctcagcaccttaaagatcacaaaaacaagaatcta |
32857063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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