View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1904_low_5 (Length: 425)
Name: NF1904_low_5
Description: NF1904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1904_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 7 - 412
Target Start/End: Original strand, 17593653 - 17594058
Alignment:
| Q |
7 |
tccaagaatatttatttgacatgatttgattgatctagtgtaaaaaagttacacagtcagtacataaaaattaatctccatttcttttttacataatcaa |
106 |
Q |
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| T |
17593653 |
tccaaaaatatttatttgacctcatttgattgatctagtgtaaaaaagttacacagtcagtacataaaaattaatctctatttcttttttacataatcaa |
17593752 |
T |
|
| Q |
107 |
atacctaacatgaaaatagctaggttgacaggtcgtgacccttatagtaataacagctaataattaactaattataaaaatgtatcaagaagctagatga |
206 |
Q |
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| T |
17593753 |
atacctaacatgaaaatagctaggttgacaggttgtgacccttatagtaataacagttaataattaactaattataaaaatgtatcaagaagctagatga |
17593852 |
T |
|
| Q |
207 |
caataaaattttctaataatagaagagaatgtaacgaattcagttaaagaattacaagctttttccatgaaattttaagaaaaggaaataaaacacagaa |
306 |
Q |
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| T |
17593853 |
caataaaattttctaataatagaagagaatgtaacgaattcagttaaagaattacaagctttttccatgaaattttaagaaaaggaaataaaacacagaa |
17593952 |
T |
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| Q |
307 |
tatcaagatttttgaggcatatcatttgaataagtcattatggaacatgaacatgatatgacaaaatttatgaaaggcgagcttaatatgccgaagggag |
406 |
Q |
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| T |
17593953 |
tatcaagatttttgaggcatatcatttgaataagtcattatggaacatgaaaatgatatagcaaaatttatgaaaggccagcttaatacgccgaaggaag |
17594052 |
T |
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| Q |
407 |
aaattg |
412 |
Q |
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| T |
17594053 |
aaattg |
17594058 |
T |
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Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 190 - 376
Target Start/End: Complemental strand, 42111900 - 42111715
Alignment:
| Q |
190 |
atcaagaagctagatgacaataaaattttctaataatagaagagaatgtaacgaattcagttaaagaattacaagctttttccatgaaattttaagaaaa |
289 |
Q |
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||||||||||| |||||||| || ||||||||||||||||||||| ||||||||| ||| ||||||||||||||||| ||||||||| ||||||||||| |
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| T |
42111900 |
atcaagaagctggatgacaacaagattttctaataatagaagaga-tgtaacgaaatcaattaaagaattacaagctctttccatgagattttaagaaat |
42111802 |
T |
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| Q |
290 |
ggaaataaaacacagaatatcaagatttttgaggcatatcatttgaataagtcattatggaacatgaacatgatatgacaaaattta |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
42111801 |
ggaaataaaacacagaatatcaagatttttgaggcatatcatttgaataagtcattatggaacatgaacatgatataataaaattta |
42111715 |
T |
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