View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1904_low_6 (Length: 420)
Name: NF1904_low_6
Description: NF1904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1904_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 2e-90; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 36 - 262
Target Start/End: Complemental strand, 5652214 - 5651988
Alignment:
| Q |
36 |
attaatctctctaagaaaaacttgtggtacaacatctcttatcaatcagattttcaatatacacaaaagtcagcgatcaagtttttaatttgtcaactac |
135 |
Q |
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| T |
5652214 |
attaatctctctaagaaaaacttgtggtacaacttctcttatca-tcagatttttaatatacacaaaagtcagcgatcaagtttttaatttgtcaagtac |
5652116 |
T |
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| Q |
136 |
acaaaaatttcatcgagatgattaatctctttaagaaaaacttgtggtacactttctcttatcaatcaga---tcaatatacagaaaagtcagcgatcaa |
232 |
Q |
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| T |
5652115 |
ataaa--tttcatcgagatgattaatctttttaaaaaaaacttgtggtacactttctcttatcaatcagattttcaatatacagaaaagtcaacgatcaa |
5652018 |
T |
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| Q |
233 |
atctctaactatttaatttaataatcaagt |
262 |
Q |
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| T |
5652017 |
atctctaactatttaatttaataatcaagt |
5651988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 317 - 416
Target Start/End: Complemental strand, 5651806 - 5651707
Alignment:
| Q |
317 |
gagtctaaacatgattttatactaaaatttgttgttcaacttgtttttacgaagnnnnnnnnnntatacaaacatatttcattttacattcatctcactc |
416 |
Q |
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| T |
5651806 |
gagtctaaacatgattttatactaaaatttgttgttcaacttgattttacgaagaaaaaaaatatatacaaatatatttcattttacattcatctcactc |
5651707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 5652113 - 5652018
Alignment:
| Q |
19 |
aaatttcatctgagattattaatctctctaagaaaaacttgtggtacaacatctcttatcaatcagattttcaatatacacaaaagtcagcgatcaa |
115 |
Q |
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| T |
5652113 |
aaatttcatc-gagatgattaatctttttaaaaaaaacttgtggtacactttctcttatcaatcagattttcaatatacagaaaagtcaacgatcaa |
5652018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 134 - 232
Target Start/End: Complemental strand, 5652235 - 5652136
Alignment:
| Q |
134 |
acacaaaaatttcatcgagatgattaatctctttaagaaaaacttgtggtacactttctcttatcaatcaga---tcaatatacagaaaagtcagcgatc |
230 |
Q |
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| T |
5652235 |
acacaaaaatttcatcatga-gattaatctctctaagaaaaacttgtggtacaacttctcttatc-atcagatttttaatatacacaaaagtcagcgatc |
5652138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 334
Target Start/End: Complemental strand, 22383349 - 22383311
Alignment:
| Q |
296 |
aagttagaatttatagtttttgagtctaaacatgatttt |
334 |
Q |
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| T |
22383349 |
aagttaggatttgtagtttttgagtctaaacatgatttt |
22383311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 356
Target Start/End: Complemental strand, 7298392 - 7298328
Alignment:
| Q |
292 |
cttgaagttagaatttatagtttttgagtctaaacatgattttatactaaaatttgttgttcaac |
356 |
Q |
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||||||| ||| |||| |||||||||||||||| | ||||||| ||| |||||| ||||||||| |
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| T |
7298392 |
cttgaagctaggatttgtagtttttgagtctaatcgtgatttttaactgaaatttattgttcaac |
7298328 |
T |
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