View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1904_low_9 (Length: 406)
Name: NF1904_low_9
Description: NF1904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1904_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 11 - 389
Target Start/End: Original strand, 33950411 - 33950784
Alignment:
| Q |
11 |
aagaacacggtaccattccattcttgatactactactataaatagggtttgtatcacatatccaaagtttcaatttcaaaacattctactacaacaatta |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33950411 |
aagaacacggtaccattccattcttgatactacta---taaatagggtttgtatcacat--ccaaagtttcaatttcaaaacattctactacaacaatta |
33950505 |
T |
|
| Q |
111 |
ttctaaactttcatttctaaagaacacagacaggcaaaaacagaagaaggaatctcaaattcatgagtagcgctacacacattattacccttacaacaag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33950506 |
ttctaaactttcatttctaaagaacacagacaggcaaaaacagaagaaggaatctcaaattcatgagtagcgctacacacattattacccttacaacaag |
33950605 |
T |
|
| Q |
211 |
atttcaatttcatgatgtcttgaacaaaatatctcaaattcttcaaaaagcacaaaagaaccaaagttcaaggcgatcattgaggttaatcttaaaggat |
310 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33950606 |
atttcaatttaatgatgtcttgaacaaaatatctcaaattcttcaaaaagcacaaaagaaccaaagttcaaggcgatcattgaggttaatcttaaaggat |
33950705 |
T |
|
| Q |
311 |
ttatctcccgttgtacaagatataaagcaatacaatgatcatttggatcaccccagagaagaaataaatagtctgatag |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33950706 |
ttatctcccgttgtacaagatataaagcaatacaatgatcatttggatcaccccagagaagaaataaatagtctgatag |
33950784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 165 - 389
Target Start/End: Original strand, 33973227 - 33973448
Alignment:
| Q |
165 |
tcaaattcatgagtagcgctac---acacattattacccttacaacaagatttcaatttcatgatgtcttgaacaaaatatctcaaattcttcaaaaagc |
261 |
Q |
| |
|
||||||||||||||||||| || ||| |||||||||||||||||||||||| | |||||||||||||||||||||| |||| || ||| ||| |
|
|
| T |
33973227 |
tcaaattcatgagtagcgccacgacacatattattacccttacaacaagatttaa------tgatgtcttgaacaaaatatctgaaatagttgaaacagc |
33973320 |
T |
|
| Q |
262 |
acaaaagaaccaaagttcaaggcgatcattgaggttaatcttaaaggatttatctcccgttgtacaagatataaagcaatacaatgatcatttggatcac |
361 |
Q |
| |
|
|| |||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |
|
|
| T |
33973321 |
acgaaagaaccaaagttcaaggctattgtttaggttaatcttaaaggatttatctcccgttgtacaagatataaagcattacaatgaacacttggatcaa |
33973420 |
T |
|
| Q |
362 |
cccagagaagaaataaatagtctgatag |
389 |
Q |
| |
|
||||||||||||||||||||| |||||| |
|
|
| T |
33973421 |
cccagagaagaaataaatagtttgatag |
33973448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 127 - 375
Target Start/End: Original strand, 33990001 - 33990246
Alignment:
| Q |
127 |
ctaaagaacacagacaggcaaaaacagaagaaggaatctcaaattcatgagtagcgc---tacacacattattacccttacaacaagatttcaatttcat |
223 |
Q |
| |
|
||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||| |
|
|
| T |
33990001 |
ctaaagaacacggacaggcaaaagcagaggaaggaatctcaaattcatgagtagcgccactacacatattattacccttacaacaagattt------cat |
33990094 |
T |
|
| Q |
224 |
gatgtcttgaacaaaatatctcaaattcttcaaaaagcacaaaagaaccaaagttcaaggcgatcattgaggttaatcttaaaggatttatctcccgttg |
323 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| ||||| |||| |||||||| |||||| || ||||||| |||||| ||||||||| ||| || | |
|
|
| T |
33990095 |
gatgtcttgaacaaaatatctcaaatagttgaaacagcacgaaagcaccaaagtgcaaggcaattgttgaggtcaatcttgaaggatttaactcttgtgg |
33990194 |
T |
|
| Q |
324 |
tacaagatataaagcaatacaatgatcatttggatcaccccagagaagaaat |
375 |
Q |
| |
|
| ||||| ||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
33990195 |
ttcaagacataaagcaatacaatgaacatttggatcatcccagagaagaaat |
33990246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 166 - 268
Target Start/End: Original strand, 33959247 - 33959349
Alignment:
| Q |
166 |
caaattcatgagtagcgctacacacattattacccttacaacaagatttcaatttcatgatgtcttgaacaaaatatctcaaattcttcaaaaagcacaa |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
33959247 |
caaattcatgagtagcgctacacacattattacccttacaacaagatttcaatttcatgatgtcttgaacaaaatatctcaaatacttcaaaaagcacga |
33959346 |
T |
|
| Q |
266 |
aag |
268 |
Q |
| |
|
||| |
|
|
| T |
33959347 |
aag |
33959349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 304 - 389
Target Start/End: Original strand, 33959346 - 33959431
Alignment:
| Q |
304 |
aaaggatttatctcccgttgtacaagatataaagcaatacaatgatcatttggatcaccccagagaagaaataaatagtctgatag |
389 |
Q |
| |
|
||||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
33959346 |
aaaggatttatctcctgtggttcaagacataaagcaatacaatgatcatttggatcaccccagagaggaaataaatagtctaatag |
33959431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University