View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19050_high_1 (Length: 930)
Name: NF19050_high_1
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19050_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 883; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 883; E-Value: 0
Query Start/End: Original strand, 1 - 915
Target Start/End: Original strand, 934885 - 935799
Alignment:
| Q |
1 |
gcactataccttctttgcctttgagatgtttcaaaatgaaggtttttgctcattcaaagaattactaatgtttgcacatctcaaaaatattgattttgca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
934885 |
gcactataccttctttgcctttgagatgtttcaaaatgaaggtttttgctcattcaaataattactaatgtttgcacatctcaaaaatattgattttgca |
934984 |
T |
|
| Q |
101 |
caaaagtgttgattagtgtaagggagatatggtaaaatgcagataccactctattctaattgccattgtaacattatcaacactattctaatgcattatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
934985 |
caaaagtgttgattagtgtaagggagatatggtaaaatgcagataccactctattctaattgccattgtaacattatcaacactattctaatgcattatt |
935084 |
T |
|
| Q |
201 |
cacgtgccaaagtgaattgtgaaccgtatgactactaatagctatgctaaattactctatatatgtattgacttgttcgatttgatggtcaatttatttt |
300 |
Q |
| |
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||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
935085 |
cacatgccaaagcgaattgtgaaccgtatgactactaatagctatgctaaattactctatatatgtattgacttgttcgatttgatggtcaatttatttt |
935184 |
T |
|
| Q |
301 |
ctgtattggaagtcatttagattgttatttttcgaggaaagttttgagtaaatagttatataaggcctataaatatattaaattggttttataagtcatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
935185 |
ctgtattggaagtcatttagattgttatttttcgaggaaagttttgagtaaatagttatataaggcctataaatatattaaattcgttttataagtcatt |
935284 |
T |
|
| Q |
401 |
aaaaggagaaaaagaaagctcttagaacatggaagtttaactttgttgtcacgttagtctaaggtgtaaaattgttatattcgtttgtaaagtttaatat |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
935285 |
aaaaggagaaaaagaaagctcttagaacatggaagtttaactttgttgtcacgttagtctaaggtgtaaaattgttatattcgtttgtaaagtttaatat |
935384 |
T |
|
| Q |
501 |
ttgtttaataactcaaagctgacaagtatttgcattggaaatgacatgaaatatcaaaattaatattgcacaatcacaagcaattagagattagtcatgc |
600 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
935385 |
ttgtttaataactcaaagctcacaagtatttgcattggaaatgacatgaaacatcaaaattaatattgcacaatcacaagcaattagagattagtcatgc |
935484 |
T |
|
| Q |
601 |
tattacatgagagtgaaaattaaacaggattcaatttcttgaatgacattctttctgtaacctttacagcaataagagcctaaactgtagctgttgggac |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
935485 |
tattacatgagagtgaaaattaaacaggattcaatttcttgaatgacattctttctgtaacctttacagcaataagagcctaaactgtagctgttgggac |
935584 |
T |
|
| Q |
701 |
aaagataacatcaggaatggatttggtaacacttcgttgagtcacaggttgtcctgttctcgtagctaccatagctgctggaggtgccactattctggtg |
800 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
935585 |
aaagataacatcaggaatggatttggtaacacttcgttgaggcacaggttgtcctgttctcgtagctaccatagctgctggaggtgccactattctggtg |
935684 |
T |
|
| Q |
801 |
atcatcatagaatcatctacattactcatatttacattcttaatcatgaaatcagtggtaattatatatatacttgttagacttttggttcaagcaaggg |
900 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
935685 |
atcatcatagaatcatctacattactcatatttacattcttaatcatgaaatcagtggtaattatatatatacttgttagacttttggttcaagcaaggg |
935784 |
T |
|
| Q |
901 |
ttgccgttattcatt |
915 |
Q |
| |
|
|| |||||||||||| |
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|
| T |
935785 |
tttccgttattcatt |
935799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 546 - 854
Target Start/End: Original strand, 937201 - 937513
Alignment:
| Q |
546 |
atgaaatatcaaaattaatattgcacaatcacaagcaattagagattagtcatgctattac---atga-gagtgaaaattaaacaggattcaatttcttg |
641 |
Q |
| |
|
|||||| |||||| | || |||||||||| |||||||||| ||||||||||||| |||||| || | ||| |||||||||| ||||||||||||||| |
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|
| T |
937201 |
atgaaacatcaaactaaacattgcacaattacaagcaattggagattagtcatgttattactacatcaagagagaaaattaaataggattcaatttcttc |
937300 |
T |
|
| Q |
642 |
aatgacattctttctgtaacctttacagcaataagagcctaaactgtagctgttgggacaaagataacatcaggaatggatttggtaacacttcgttgag |
741 |
Q |
| |
|
||||||||||||| || || || |||||||| ||||| ||| |||||||||||||||||||||||||||||||||| ||| |||||||| |||||| |
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| T |
937301 |
aatgacattcttttggtgactttaacagcaatgagagctaaaatagtagctgttgggacaaagataacatcaggaatggctttcataacacttagttgag |
937400 |
T |
|
| Q |
742 |
tcacaggttgtcctgttctcgtagctaccatagctgctggaggtgccactattctggtgatcatcatagaatcatctacattactcatatttacattctt |
841 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| || || |||||||||||||| |
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| T |
937401 |
gcacagactgtcctgttctcttagctaccatagctgctggaggtgccactattccagttatcatcatagaatcatctactttgcttatatttacattctt |
937500 |
T |
|
| Q |
842 |
aatcatgaaatca |
854 |
Q |
| |
|
||||||||||||| |
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|
| T |
937501 |
aatcatgaaatca |
937513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 755 - 857
Target Start/End: Complemental strand, 7584356 - 7584254
Alignment:
| Q |
755 |
tgttctcgtagctaccatagctgctggaggtgccactattctggtgatcatcatagaatcatctacattactcatatttacattcttaatcatgaaatca |
854 |
Q |
| |
|
||||||| |||||| ||||||||||| ||||| ||||||| ||||||||||| |||||||||| ||||| ||||||| |||||||| |||||||||| |
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| T |
7584356 |
tgttctcttagctatcatagctgctgtaggtgatactattccattgatcatcatataatcatctactttactaatatttatattcttaaccatgaaatca |
7584257 |
T |
|
| Q |
855 |
gtg |
857 |
Q |
| |
|
||| |
|
|
| T |
7584256 |
gtg |
7584254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 565 - 720
Target Start/End: Complemental strand, 7584526 - 7584365
Alignment:
| Q |
565 |
attgcacaatcacaagcaattagagattagtcatgctatta---catga-gagtgaaaattaaacaggattcaatt--tcttgaatgacattctttctgt |
658 |
Q |
| |
|
||||||||||||||||| ||| ||||||| ||||||||||| ||| | || | |||||||| ||||||||||| ||||||| |||||||||| | |
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|
| T |
7584526 |
attgcacaatcacaagctattggagattaatcatgctattattacattaagaaaggaaattaaataggattcaatttatcttgaaagacattctttagat |
7584427 |
T |
|
| Q |
659 |
aacctttacagcaataagagcctaaactgtagctgttgggacaaagataacatcaggaatgg |
720 |
Q |
| |
|
|| ||||||| ||| |||||| ||||||||| |||||||||| | ||||||||| |||||| |
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|
| T |
7584426 |
gacttttacagtaatgagagccaaaactgtagttgttgggacagatataacatcaagaatgg |
7584365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 626 - 695
Target Start/End: Complemental strand, 7586030 - 7585961
Alignment:
| Q |
626 |
aggattcaatttcttgaatgacattctttctgtaacctttacagcaataagagcctaaactgtagctgtt |
695 |
Q |
| |
|
||||||||||||||| ||||||||||||| | || |||| |||||| |||||| ||| |||||||||| |
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|
| T |
7586030 |
aggattcaatttcttaaatgacattcttttgatgacttttatagcaatgagagccaaaattgtagctgtt |
7585961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 666 - 719
Target Start/End: Complemental strand, 38410495 - 38410442
Alignment:
| Q |
666 |
acagcaataagagcctaaactgtagctgttgggacaaagataacatcaggaatg |
719 |
Q |
| |
|
|||||||| |||||| |||||||||||| || ||||||||||||||||||||| |
|
|
| T |
38410495 |
acagcaatgagagccaaaactgtagctgagggaacaaagataacatcaggaatg |
38410442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 749 - 850
Target Start/End: Complemental strand, 38410409 - 38410308
Alignment:
| Q |
749 |
ttgtcctgttctcgtagctaccatagctgctggaggtgccactattctggtgatcatcatagaatcatctacattactcatatttacattcttaatcatg |
848 |
Q |
| |
|
|||||||||||| |||| || || |||||||| ||||||||||||| | ||| |||||||| |||||||| || | | ||| ||||||||| ||||| |
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|
| T |
38410409 |
ttgtcctgttcttttagccactatggctgctggtggtgccactattccagcgattatcatagattcatctactttgttgagattcacattcttattcatg |
38410310 |
T |
|
| Q |
849 |
aa |
850 |
Q |
| |
|
|| |
|
|
| T |
38410309 |
aa |
38410308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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