View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19050_high_10 (Length: 530)
Name: NF19050_high_10
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19050_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 19 - 515
Target Start/End: Complemental strand, 15306735 - 15306239
Alignment:
| Q |
19 |
gtagcgactggccaagatgattgaaatggtagttggcacaaaggtaaaggatcctccaataactgctggtagtcgagtcccaaacaatgtttgtattaat |
118 |
Q |
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| T |
15306735 |
gtagcgactggccaagatgattgaaatggtagttggcacaaaggtaaaggatcctccgataactgctggtagtcgagtcccaaacaatgtttgtattaat |
15306636 |
T |
|
| Q |
119 |
gtgtttataccagccacaaacaaatgattttgaatcagcattgctttttcttcctattgaaacacaaattaagctatttgttaaaagaaaaaacctatat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
15306635 |
gtgtttataccagccacaaacaaatgattttgaatcagcattgctttttcttcctattgaaacacaaattaagctatttgttaaaagagaaaaactatat |
15306536 |
T |
|
| Q |
219 |
aacatcatcaaaaatcaannnnnnnnnnnncttacacatcaagacttacatttcctcctcccatctgtgaaactagagcagttggtatcaaaacagttgt |
318 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15306535 |
aacaccatcaaaaatcaattttccttttttcttacacatcaagacttacatttcctcctcccatctgtgaaactagagcagttggtatcaaaacagttgt |
15306436 |
T |
|
| Q |
319 |
gcccaacatcaccaagtaatgttgaaaaccaagcattattgcctccgcttcattagaatcataattctaagctcaataatcaacattgaacacacaggta |
418 |
Q |
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| T |
15306435 |
gcccaacatcaccaagtaatgttgaaaaccaagcattattgcctccgcttcattagaatcataattctaagctcaacaatcaacattgaacacgcaggta |
15306336 |
T |
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| Q |
419 |
taacatgaacttggattaaatgcagtcagtggtcagtcaacacctctaaaccatccgatcaagaccaaatgattcggatctaaagacagttttttat |
515 |
Q |
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| T |
15306335 |
taacatgaacttggattaaatgcagtcagtggtcagtcaacacctctaaaccatccgatcaagaccaaatgattcggatctaaagacagttttttat |
15306239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 259 - 373
Target Start/End: Original strand, 26475282 - 26475396
Alignment:
| Q |
259 |
aagacttacatttcctcctcccatctgtgaaactagagcagttggtatcaaaacagttgtgcccaacatcaccaagtaatgttgaaaaccaagcattatt |
358 |
Q |
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||||||||||||||||||||||||||| | |||||||| |||| || | ||||||||| || | |||||| | |||||||||||||||||| | ||| |
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| T |
26475282 |
aagacttacatttcctcctcccatctgaggaactagagagcttggaattagaacagttgtaccaagcatcacaaggtaatgttgaaaaccaagtaggatt |
26475381 |
T |
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| Q |
359 |
gcctccgcttcatta |
373 |
Q |
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| T |
26475382 |
gcctcggcttcatta |
26475396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 182
Target Start/End: Original strand, 26475051 - 26475204
Alignment:
| Q |
29 |
gccaagatgattgaaatggtagttggcacaaaggtaaaggatcctccaataactgctggtagtcgagtcccaaacaatgtttgtattaatgtgtttatac |
128 |
Q |
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||||| || |||||||| || ||||||||||| || |||||||||||||||| || ||||| ||||| ||||| |||||| | |||||||| || | |
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| T |
26475051 |
gccaaaataattgaaatagttgttggcacaaaagtgtaggatcctccaataaccgcaggtagacgagttccaaatgttgtttggaaaaatgtgttaattc |
26475150 |
T |
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| Q |
129 |
cagccacaaacaaatgattttgaatcagcattgctttttcttcctattgaaaca |
182 |
Q |
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|||||||||| | || | ||||||| ||||||| |||||||||||||||| |
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| T |
26475151 |
cagccacaaatagtagagtctgaatcacttttgctttctcttcctattgaaaca |
26475204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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