View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19050_high_18 (Length: 440)

Name: NF19050_high_18
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19050_high_18
NF19050_high_18
[»] chr2 (4 HSPs)
chr2 (14-425)||(34324359-34324766)
chr2 (75-425)||(29353092-29353436)
chr2 (81-197)||(44919370-44919486)
chr2 (124-197)||(44913374-44913447)
[»] chr8 (5 HSPs)
chr8 (81-425)||(4026998-4027342)
chr8 (81-198)||(15339032-15339149)
chr8 (81-198)||(15428097-15428214)
chr8 (81-198)||(15519401-15519518)
chr8 (79-184)||(22944581-22944686)
[»] chr7 (3 HSPs)
chr7 (93-376)||(30248981-30249264)
chr7 (105-274)||(25627305-25627474)
chr7 (318-388)||(25627527-25627597)
[»] chr5 (3 HSPs)
chr5 (81-277)||(30650665-30650861)
chr5 (81-277)||(31777012-31777207)
chr5 (121-198)||(42261490-42261567)
[»] chr1 (1 HSPs)
chr1 (81-194)||(51869092-51869205)
[»] chr4 (1 HSPs)
chr4 (124-194)||(20425740-20425810)
[»] scaffold0129 (1 HSPs)
scaffold0129 (141-198)||(9602-9659)
[»] chr6 (2 HSPs)
chr6 (141-197)||(21379324-21379380)
chr6 (141-217)||(29299191-29299267)


Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 14 - 425
Target Start/End: Original strand, 34324359 - 34324766
Alignment:
14 aggtacccaaatcagtcatgaggccaacatatacacgcgaaaaactaccgcgtgcatacctgtaaacaaggttagaaaccacatacctcaagatcttgca 113  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
34324359 aggtacccaaatcagtcatgaggccaacatatacatgcaaaaaactaccgcgtgcatacctgtaaaaaaggttagaaaccacatacctcaagatcttgca 34324458  T
114 ttattagttttgtcgaaacttcctttaaaatctttgaaacgttttggatgtgtacacaaaacatggtctctcttatttgaaaaccagtgtttcatcacca 213  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34324459 ttattagttttgtcgaaagttcctttaaaatctttgaa-cgttttggatgtgtacacaaaacatggtctctcttatttgaaaaccagtgtttcatcacca 34324557  T
214 tgttcagggataatttcatatctatttctcactcctactacgatgatacatcactcatcctacaccaagttgtctataacagtggcaggaccgtgtcctt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||    
34324558 tgttcagggataatttcatatctatttctcactcctactacgatgatacatcacttatcctacaccaggttgtctataacagtggctggaccgtgtcctt 34324657  T
314 tttgcatttactgtctagtcagagctttgagaatagacttaaattggacttgccaactccacttcaacaggaggagtaccctatcttttatattaggggt 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   || ||||||||||||||||||||    
34324658 tttgcatttactgtctagtcagagctttgagaatagacttaaattggacttgccaactccacttcaacaagagg---acgctatcttttatattaggggt 34324754  T
414 tctagcactaat 425  Q
    ||||||||||||    
34324755 tctagcactaat 34324766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 75 - 425
Target Start/End: Complemental strand, 29353436 - 29353092
Alignment:
75 gtaaacaaggttagaaaccacatacctcaagatcttgcattattagttttgtcgaaacttcctttaaaatctttgaaacgttttggatgtgtacacaaaa 174  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| | ||||    
29353436 gtaaaaaaggttagaaaccacatatctcaagatcttgcattattagttttgtcaaaacttcctttaaaatctttgaagcgttttggatgcgtaaataaaa 29353337  T
175 catggtctctcttatttgaaaaccagtgtttcatcaccatgttcagggataatttcatatctatttctcactcctactacgatgatacatcactcatcct 274  Q
    ||||||||||||||||||||||||    |||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||| |||||||    
29353336 catggtctctcttatttgaaaaccctaatttcatcaccatgttcggggataatttcatatctatttatcactcgtactacgatgatacatcattcatcct 29353237  T
275 acaccaagttgtctataacagtggcaggaccgtgtcctttttgcatttactgtctagtcagagctttgagaatagacttaaattggacttgccaactcca 374  Q
    ||||||  ||||||||||   |  ||  |    ||||| |||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
29353236 acaccagtttgtctataaagctcacatta---ggtcctatttgcacttactgtctagtcggagctttgagaatagactcaaattggacttgccaactcca 29353140  T
375 cttcaacaggaggagtaccctatcttttatattaggggttctagcactaat 425  Q
    |||||||||||||   ||||| || |||||||| |||||||||||||||||    
29353139 cttcaacaggagg---accctgtcctttatatttggggttctagcactaat 29353092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 197
Target Start/End: Complemental strand, 44919486 - 44919370
Alignment:
81 aaggttagaaaccacatacctcaagatcttgcattattagttttgtcgaaacttcctttaaaatctttgaaacgttttggatgtgtacacaaaacatggt 180  Q
    |||||||| || ||||||||  | ||||||||||| |   || |||| |||||||||||||||||||| || |  |||| ||||||||  ||| |||||     
44919486 aaggttaggaatcacatacccaatgatcttgcattctctattctgtcaaaacttcctttaaaatcttttaagccatttgaatgtgtacgtaaatcatggg 44919387  T
181 ctctcttatttgaaaac 197  Q
    |||||||||||||||||    
44919386 ctctcttatttgaaaac 44919370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 197
Target Start/End: Complemental strand, 44913447 - 44913374
Alignment:
124 tgtcgaaacttcctttaaaatctttgaaacgttttggatgtgtacacaaaacatggtctctcttatttgaaaac 197  Q
    |||| |||||| ||||||||||||| ||||| |||||||| |||   ||| ||||| || ||||||||||||||    
44913447 tgtcaaaactttctttaaaatctttaaaacgatttggatgcgtatgtaaaccatggactttcttatttgaaaac 44913374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 81 - 425
Target Start/End: Original strand, 4026998 - 4027342
Alignment:
81 aaggttagaaaccacatacctcaagatcttgcattattagttttgtcgaaacttcctttaaaatctttgaaacgttttggatgtgtacacaaaacatggt 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
4026998 aaggttagaaaccacatacctcaagatcttgcattattagttttgtcgaaacttcctttaaaatctttgaaacgttttggatgtgtacacaaaccatggt 4027097  T
181 ctctcttatttgaaaaccagtgtttcatcaccatgttcagggataatttcatatctatttctcactcctactacgatgatacatcactcatcctacacca 280  Q
    ||||||||||||||||||| | |||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
4027098 ctctcttatttgaaaaccaatatttcatcaccatgttcgggactaatttcatatctatttctcactcctactacgatgatacatcactcatcctacatca 4027197  T
281 agttgtct---ataacagtggcaggaccgtgtcctttttgcatttactgtctagtcagagctttgagaatagacttaaattggacttgccaactccactt 377  Q
     |||||||   |||| ||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4027198 ggttgtctataataaaagtcgcaggaccgtctcctatttgcatttactgtctagtcagagctttgagaatagacttaaattggacttgccaactccactt 4027297  T
378 caacaggaggagtaccctatcttttatattaggggttctagcactaat 425  Q
    ||||||||||   |||||||||||||||||||||||||||||||||||    
4027298 caacaggagg---accctatcttttatattaggggttctagcactaat 4027342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 198
Target Start/End: Complemental strand, 15339149 - 15339032
Alignment:
81 aaggttagaaaccacatacctcaagatcttgcattattagttttgtcgaaacttcctttaaaatctttgaaacgttttggatgtgtacacaaaacatggt 180  Q
    ||||||||||| ||||||||  | ||||||| ||| |   ||||||| |||||| |||||||| ||||||| || |||||||| |||   |||||||||     
15339149 aaggttagaaatcacatacccgatgatcttgtattctctattttgtcaaaactttctttaaaacctttgaagcgatttggatgcgtaagaaaaacatggg 15339050  T
181 ctctcttatttgaaaacc 198  Q
    ||||||| || |||||||    
15339049 ctctcttgttagaaaacc 15339032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 198
Target Start/End: Complemental strand, 15428214 - 15428097
Alignment:
81 aaggttagaaaccacatacctcaagatcttgcattattagttttgtcgaaacttcctttaaaatctttgaaacgttttggatgtgtacacaaaacatggt 180  Q
    ||||||||||| ||||||||  | ||||||| ||| |   ||||||| |||||| |||||||| ||||||| || |||||||| |||   |||||||||     
15428214 aaggttagaaatcacatacccgatgatcttgtattctctattttgtcaaaactttctttaaaacctttgaagcgatttggatgcgtaagaaaaacatggg 15428115  T
181 ctctcttatttgaaaacc 198  Q
    ||||||| || |||||||    
15428114 ctctcttgttagaaaacc 15428097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 198
Target Start/End: Complemental strand, 15519518 - 15519401
Alignment:
81 aaggttagaaaccacatacctcaagatcttgcattattagttttgtcgaaacttcctttaaaatctttgaaacgttttggatgtgtacacaaaacatggt 180  Q
    ||||||||||| ||||||||  | ||||||| ||| |   ||||||| |||||| |||||||| ||||||| || |||||||| |||   |||||||||     
15519518 aaggttagaaatcacatacccgatgatcttgtattctctattttgtcaaaactttctttaaaacctttgaagcgatttggatgcgtaagaaaaacatggg 15519419  T
181 ctctcttatttgaaaacc 198  Q
    ||||||| || |||||||    
15519418 ctctcttgttagaaaacc 15519401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 184
Target Start/End: Original strand, 22944581 - 22944686
Alignment:
79 acaaggttagaaaccacatacctcaagatcttgcattattagttttgtcgaaacttcctttaaaatctttgaaacgttttggatgtgtacacaaaacatg 178  Q
    |||||||||| ||||| |||||| | |||||||  || |   |||||||||||||||||||||| ||  ||||||| |||  ||||||||||||| ||||    
22944581 acaaggttagtaaccatatacctaatgatcttgtcttttctattttgtcgaaacttcctttaaagtccatgaaacgatttaaatgtgtacacaaatcatg 22944680  T
179 gtctct 184  Q
    | ||||    
22944681 ggctct 22944686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 93 - 376
Target Start/End: Original strand, 30248981 - 30249264
Alignment:
93 cacatacctcaagatcttgcattattagttttgtcgaaacttcctttaaaatctttgaaacgttttggatgtgtacacaaaacatggtctctcttatttg 192  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||||| || ||||||| ||||| ||||||||||||||||||||||||||    
30248981 cacatacctcaagatcttgcatcattagttttgtcaaaacttcctttaaaatctttaaagcgttttgaatgtgcacacaaaacatggtctctcttatttg 30249080  T
193 aaaaccagtgtttcatcaccatgttcagggataatttcatatctatttctcactcctactacgatgatacatcactcatcctacaccaagttgtctataa 292  Q
    |||||||   ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||| ||  ||||| ||||    
30249081 aaaaccatgttttcatcaccatgttcagggataatttcacatctatttctcactcctactatgatgatacatcactcatcatacaacagcttgtccataa 30249180  T
293 cagtggcaggaccgtgtcctttttgcatttactgtctagtcagagctttgagaatagacttaaattggacttgccaactccact 376  Q
      || |||| || |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
30249181 aggtcgcagcactgtgtccattttgcatttactgtctagtcagagctttgagaatagactaaaattggacttgccaactccact 30249264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 105 - 274
Target Start/End: Original strand, 25627305 - 25627474
Alignment:
105 gatcttgcattattagttttgtcgaaacttcctttaaaatctttgaaacgttttggatgtgtacacaaaacatggtctctcttatttgaaaaccagtgtt 204  Q
    |||||||||||||||||| | || ||||||||  | ||||||||||| |||| |||||| ||  | ||| ||||||||||||||||||||||||  | ||    
25627305 gatcttgcattattagttctatcaaaacttccaatcaaatctttgaagcgttctggatgcgttaagaaatcatggtctctcttatttgaaaacccttctt 25627404  T
205 tcatcaccatgttcagggataatttcatatctatttctcactcctactacgatgatacatcactcatcct 274  Q
    |||| ||||||||| |  ||||||||||||||||| ||||||| ||||| ||||||||| || |||||||    
25627405 tcatgaccatgttccgcaataatttcatatctattcctcactcttactatgatgatacaacaatcatcct 25627474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 388
Target Start/End: Original strand, 25627527 - 25627597
Alignment:
318 catttactgtctagtcagagctttgagaatagacttaaattggacttgccaactccacttcaacaggagga 388  Q
    |||| ||| |||||| |||| |||||||||||||| |||||  ||||||||| |||| ||||| |||||||    
25627527 cattcactatctagtaagaggtttgagaatagactcaaattccacttgccaaatccatttcaagaggagga 25627597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 7e-50; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 81 - 277
Target Start/End: Original strand, 30650665 - 30650861
Alignment:
81 aaggttagaaaccacatacctcaagatcttgcattattagttttgtcgaaacttcctttaaaatctttgaaacgttttggatgtgtacacaaaacatggt 180  Q
    |||||||| |||||||||||  ||||||||||||||||  || | || |||||||||||||||||||| |||||||||||||||||| | ||||||||||    
30650665 aaggttagtaaccacataccggaagatcttgcattattcattctatcaaaacttcctttaaaatctttaaaacgttttggatgtgtaaagaaaacatggt 30650764  T
181 ctctcttatttgaaaaccagtgtttcatcaccatgttcagggataatttcatatctatttctcactcctactacgatgatacatcactcatcctaca 277  Q
    ||||||||||||||||    | |||||||||||||||| |   |||||||||||||||| ||||||| ||||| ||||||||| |||||||||||||    
30650765 ctctcttatttgaaaattcttatttcatcaccatgttccgcactaatttcatatctattcctcactcttactatgatgatacaacactcatcctaca 30650861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 81 - 277
Target Start/End: Original strand, 31777012 - 31777207
Alignment:
81 aaggttagaaaccacatacctcaagatcttgcattattagttttgtcgaaacttcctttaaaatctttgaaacgttttggatgtgtacacaaaacatggt 180  Q
    |||||||| |||||||||||  |||| |||||||||||  || | || |||||||| ||||||||||| || ||||| ||||||||| | ||||||||||    
31777012 aaggttagtaaccacataccagaagaacttgcattattcattctatcaaaacttccattaaaatctttaaagcgttt-ggatgtgtaaagaaaacatggt 31777110  T
181 ctctcttatttgaaaaccagtgtttcatcaccatgttcagggataatttcatatctatttctcactcctactacgatgatacatcactcatcctaca 277  Q
    |||||||||||||||||   | |||||||||||||||| |    |||||||||| |||| ||||||| ||||| ||||||||| |||||||||||||    
31777111 ctctcttatttgaaaactcttatttcatcaccatgttccgcacgaatttcatatatattcctcactcttactatgatgatacaacactcatcctaca 31777207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 121 - 198
Target Start/End: Original strand, 42261490 - 42261567
Alignment:
121 ttttgtcgaaacttcctttaaaatctttgaaacgttttggatgtgtacacaaaacatggtctctcttatttgaaaacc 198  Q
    ||||||| ||||| ||||||||||| ||||| || |||  |||||||  |||| |||||||||||||||| |||||||    
42261490 ttttgtcaaaactgcctttaaaatcattgaagcggtttatatgtgtatgcaaatcatggtctctcttattcgaaaacc 42261567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 81 - 194
Target Start/End: Original strand, 51869092 - 51869205
Alignment:
81 aaggttagaaaccacatacctcaagatcttgcattattagttttgtcgaaacttcctttaaaatctttgaaacgttttggatgtgtacacaaaacatggt 180  Q
    |||||||| || ||||||||  |  |||||||||| |  |||||||| |||||||| ||||||||||||||||| |||||||||| | ||||| ||||||    
51869092 aaggttaggaatcacatacccaatcatcttgcattctctgttttgtcaaaacttccgttaaaatctttgaaacgatttggatgtgcatacaaaccatggt 51869191  T
181 ctctcttatttgaa 194  Q
    ||||||||||||||    
51869192 ctctcttatttgaa 51869205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 20425740 - 20425810
Alignment:
124 tgtcgaaacttcctttaaaatctttgaaacgttttggatgtgtacacaaaacatggtctctcttatttgaa 194  Q
    |||| |||||||||||||||||||||||||| |||| ||| |||  |||  |||||||||| |||||||||    
20425740 tgtcaaaacttcctttaaaatctttgaaacgatttgaatgcgtatgcaatgcatggtctcttttatttgaa 20425810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 9602 - 9659
Alignment:
141 aaatctttgaaacgttttggatgtgtacacaaaacatggtctctcttatttgaaaacc 198  Q
    |||||||||||||| ||| | |||||||| ||| ||||||||| ||||||||||||||    
9602 aaatctttgaaacgatttagttgtgtacataaatcatggtctcgcttatttgaaaacc 9659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 21379380 - 21379324
Alignment:
141 aaatctttgaaacgttttggatgtgtacacaaaacatggtctctcttatttgaaaac 197  Q
    ||||||||||| || |||||||| || |  ||| |||||||||||||||||||||||    
21379380 aaatctttgaagcgatttggatgcgtccgtaaatcatggtctctcttatttgaaaac 21379324  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 29299191 - 29299267
Alignment:
141 aaatctttgaaacgttttggatgtgtacacaaaacatggtctctcttatttgaaaaccagtgtttcatcaccatgtt 217  Q
    |||||||| || ||||||| |||||| | |||| ||||||||||||| |||||||| |||   ||||| ||||||||    
29299191 aaatcttttaagcgttttgaatgtgttcgcaaatcatggtctctcttgtttgaaaatcaggacttcatgaccatgtt 29299267  T

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