View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19050_high_29 (Length: 325)
Name: NF19050_high_29
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19050_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 310
Target Start/End: Complemental strand, 29700439 - 29700145
Alignment:
| Q |
17 |
aggtactatatagttcatgaccacaaatcacaatgatcatttactcctttaatcagtaccacacctttttgctggtatccaattatttagtcaccagtgg |
116 |
Q |
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| T |
29700439 |
aggtactatatagttcatgaccacaaatcacaatgatcatttactcctttaatcaggaccacacctttttgctggtatccaattatttagtcaccagtgg |
29700340 |
T |
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| Q |
117 |
agggcgtgcaattattatgttacaagtcttctaacatgatctacacaaaatatcttttgtataacgaaatacaaaaggggtcatgtctgtgtaatggtgt |
216 |
Q |
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| T |
29700339 |
agggcgtgcaattattatgttacaagtcttctaatatgatctacacaaaatatcttttgtataacgaaatacaaaaggggtcatgtctgtgaaatggtgt |
29700240 |
T |
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| Q |
217 |
aggaagtcaaatgaaaaaatgttaagttgataatgacatt-ttttaaacttttgatgcattgattgtacaacttctagtgtaaatactactatat |
310 |
Q |
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| T |
29700239 |
aggaagtcaaaagaaaaaatgttaagttgataatgacatttttttaaacttttgatgcgttgattgtacaacttctaatgtaaatactactatat |
29700145 |
T |
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 310
Target Start/End: Complemental strand, 16759241 - 16759147
Alignment:
| Q |
216 |
taggaagtcaaatgaaaaaatgttaagttgataatgacattttttaaacttttgatgcattgattgtacaacttctagtgtaaatactactatat |
310 |
Q |
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| T |
16759241 |
taggaagtcaaaagaaaaaaaattaagttgaaaaatacactttttaaacttttgatgtattgattgcacaacttgcaatgtaaatactaccatat |
16759147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 47720179 - 47720231
Alignment:
| Q |
254 |
attttttaaacttttgatgcattgattgtacaacttctagtgtaaatactact |
306 |
Q |
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| T |
47720179 |
attttttaaacttttaatgcattgattatacaacttttaatgtaaatattact |
47720231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 47727171 - 47727223
Alignment:
| Q |
254 |
attttttaaacttttgatgcattgattgtacaacttctagtgtaaatactact |
306 |
Q |
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| T |
47727171 |
attttttaaacttttaatgcattgattatacaacttttaatgtaaatattact |
47727223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 310
Target Start/End: Original strand, 21622654 - 21622747
Alignment:
| Q |
217 |
aggaagtcaaatgaaaaaatgttaagttgataatgacattttttaaacttttgatgcattgattgtacaacttctagtgtaaatactactatat |
310 |
Q |
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|||||| |||| |||||||| |||||| | || ||||||||| ||| |||| ||||||||||| ||||||| | |||||||| |||||||| |
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| T |
21622654 |
aggaagccaaaagaaaaaattgtaagttaaaaaagacatttttcaaatttttaatgcattgattacacaactttcaatgtaaatattactatat |
21622747 |
T |
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