View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19050_high_3 (Length: 708)
Name: NF19050_high_3
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19050_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 648; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 15 - 697
Target Start/End: Original strand, 8839868 - 8840553
Alignment:
| Q |
15 |
cagaaaccattgaggctgtgaagtctcctcctatctgtgagaaggtttcagaagacattgatcattttcttcttcatgagaaagaaggagtgtcgtttga |
114 |
Q |
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| T |
8839868 |
cagaaaccattgaggctgtgaagtctccccctatctgtgagaaggtttcagaagacattgatcattttcttctgcatgagaaagaaggagtgtcgtttga |
8839967 |
T |
|
| Q |
115 |
gattcctggttacatagagaagtttttggatcaggtggaggagaatatggtgaagaatgaaactggagaacggaaaggaaaatgggaagagattatggag |
214 |
Q |
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| T |
8839968 |
gattcctggttacatagagaagtttttggatcaggtggaggagaatatggtgaagaatgaaactggagaacggaaaggaaaatgggaagagattatggag |
8840067 |
T |
|
| Q |
215 |
aaagataaatggttgcttgaatctgtgcatcgaatttcgaagcttaagaaaatgttgatgattcatgatgaaaaagaaaccatagatgaaagaagaaagt |
314 |
Q |
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| T |
8840068 |
aaagataaatggttgcttgaatctgtgcatcgaatttcgaagcttaagaaaatgttgatgattcatgatgaaaaagaaaccatagatgaaagaagaaagt |
8840167 |
T |
|
| Q |
315 |
caatagccaatcgtgttggtaaaattcaacagaaagcgatggcgtttttggaagaagattttcgcgtgttgatagaatattctagaatccagaccgaagt |
414 |
Q |
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| T |
8840168 |
caatagccaatcgtgttggtacaattcaacagaaagcgatggcgtttttggaagaagattttcgcgtgttgatagaatattctagaatccagaccgaagt |
8840267 |
T |
|
| Q |
415 |
gaatcctgatatcaatatcaatgaaaaggttgatgcaaaacgaa---aagtggcgtcagatcaacaggacgggcaatcagatcatcaggatcaaccagaa |
511 |
Q |
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| T |
8840268 |
gaatcctgatatcaatatcaatgaaaaggttgatgcaaaacgaaaacaagtggtgtcggatcaacaggacgggcaatcagatcatcaggatcaaccagaa |
8840367 |
T |
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| Q |
512 |
gaattcgaaacgaattttcctggttatcctgatgaggcgattgtttgtatgagtaagattgtgggggagatgttgatcggaggatatgaaagtgagtgtt |
611 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8840368 |
gaattcgaaacgaattttcctggttatcctgatgaggcgattgtttgtatgagcaagattgtgggggagatgttgatcggaggatatgaaagtgagtgtt |
8840467 |
T |
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| Q |
612 |
gtcaggtgtacattgtggcgagaaggaccgcgttcgaggagattcaacagcagctggggctggaaagaatcagtattgatgatatt |
697 |
Q |
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| T |
8840468 |
gtcaggtgtacattgtggcgagaaggaccgcgttcgaggagattcaacagcagctggggctggaaagaatcagtattgatgatatt |
8840553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 10627094 - 10627062
Alignment:
| Q |
53 |
gagaaggtttcagaagacattgatcattttctt |
85 |
Q |
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| T |
10627094 |
gagaaggtttcagaagacattgatcaatttctt |
10627062 |
T |
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