View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19050_high_30 (Length: 324)
Name: NF19050_high_30
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19050_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 10 - 306
Target Start/End: Original strand, 51938134 - 51938417
Alignment:
| Q |
10 |
attattctggaaagtttacgagcatcgtttaacactggtctagcccattccactagattctgttctcttggtggacgtaccttgtcgactgaccttctac |
109 |
Q |
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| T |
51938134 |
attattctggaaagtttacgagcatcgtttaacactggtctagcccattccactagattctgttctcttggtggacgtaccttgtcgactgaccttctac |
51938233 |
T |
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| Q |
110 |
cggttaatagctccaagagaacaactccaaaactatacacatcactcattgctgtcaaatgtcctatatgttgaaataaaattgaagttaagctgtgaat |
209 |
Q |
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| T |
51938234 |
cggttaatagctccaagagaacaactccaaaactatacacatcactcattgctgtcaaatgtcctatatgttgaaataaaattgaagttaagctgtgaat |
51938333 |
T |
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| Q |
210 |
tatattaactacgaaacaagaaacggacacgaatatcagacacgacagtgacatagatatgttagacactgcttaagtctgaatgtgaaatgtaaac |
306 |
Q |
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| T |
51938334 |
tatattaactacgaaacaagaaa-------------cagacacgacagtgacatagatatgttagacactgcttaagtctgaatgtgaaatgtaaac |
51938417 |
T |
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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 7401719 - 7401663
Alignment:
| Q |
112 |
gttaatagctccaagagaacaactccaaaactatacacatcactcattgctgtcaaa |
168 |
Q |
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| T |
7401719 |
gttagtagctctaagagaacaactccaaagctatatacatcactcattgttgtcaaa |
7401663 |
T |
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