View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19050_high_35 (Length: 304)
Name: NF19050_high_35
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19050_high_35 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 29906290 - 29905989
Alignment:
| Q |
1 |
tttatcactcaagtcatggcttcattcatgcagctaattagtcaagtctctttaacagttaaacatctagcatgcatggttccatagtatgaaacatatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29906290 |
tttatcactcaagtcatggcttcattcatgcagctaattagtcaagtctctttaacagttaaacatctagcatgcatggttccatagtatgaaacatatt |
29906191 |
T |
|
| Q |
101 |
ctggagactgttatagccaagtggatgatatatcacccatcactagtacatagtgcactgttacacatgttttgctacccgtgattttcaaaaacactat |
200 |
Q |
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|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29906190 |
ctagagactgttatagccaagtggatgatttatcacccatcactagtacatagtgcactgttacacatgttttgctacccgtgattttcaaaaacactat |
29906091 |
T |
|
| Q |
201 |
cactgctttccaatctttttattgc----------------ataaacgcacgtatcgtgtttgttatatttttatactcgtgtagattgttacacttttt |
284 |
Q |
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||||||||||||||||||||||||| ||||| | | |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29906090 |
cactgctttccaatctttttattgcggtaatgcatataaatataaatggatatatcgtgtttgttatatttttatactcgtgtagattgttacatttttt |
29905991 |
T |
|
| Q |
285 |
at |
286 |
Q |
| |
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|| |
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|
| T |
29905990 |
at |
29905989 |
T |
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