View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19050_high_4 (Length: 631)
Name: NF19050_high_4
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19050_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 307 - 621
Target Start/End: Original strand, 16377207 - 16377535
Alignment:
| Q |
307 |
gctgacactcacttatacacagtaaacaacctcggtcattgatttaaaatcaaacggctcaaatttcacattagcaacattaattttaaacaatatatgt |
406 |
Q |
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| T |
16377207 |
gctgacactcacttatacacagtaaacaacctcggtcattgatttaaaatcaaacggctcaaatttcacattagcaacattaattttaaacaatatatgt |
16377306 |
T |
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| Q |
407 |
tgttgatttagattgggccatggagattgataatttcagttggtcttcaaaattgacgatttttgtacttttggtcctgactttaccaaaatcaactatt |
506 |
Q |
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| T |
16377307 |
tgttgatttagattggaccatggggattgataatttcagttggtcttcaaaattgaggatttttgtacttttggtcctgactttaccaaaatcaactatt |
16377406 |
T |
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| Q |
507 |
tctggagactaaaactgcaaaaacaaaattgt--------------agggaccaaaatagtgaatttgagaaaatacagaacaaaaagaacaaataatga |
592 |
Q |
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| T |
16377407 |
tctggagattaaaacagcaaaaacaaaattgtagggaccaaattcgagggaccaaaatagtgaatttgagaaaatacagaacaaaaagaacaaataatga |
16377506 |
T |
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| Q |
593 |
aaattcatacatgattaggatgatgatgt |
621 |
Q |
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| T |
16377507 |
aaattcatacatgattaggattatgatgt |
16377535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 99 - 231
Target Start/End: Original strand, 16376999 - 16377131
Alignment:
| Q |
99 |
acaccggtataaactcaaaagctacttgaagtggtttaccaaacaacattatttttatgatatgagtttatacgttataagttatttgatgtaagattgt |
198 |
Q |
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| T |
16376999 |
acaccggtataaactcaaaagctacttgaagtagtttaccaaacaacattatttttatgatatgagtttatacgttataagttatttgatgtaagattgt |
16377098 |
T |
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| Q |
199 |
gattagtacttgctaaagaaactgttaattgta |
231 |
Q |
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| T |
16377099 |
gattagtacttgctaaagaaactgttaattgta |
16377131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 16376907 - 16376969
Alignment:
| Q |
1 |
ttttttcttgcccgtctctgctcgtttggaacagggatttgatttttgataaatttttccgtt |
63 |
Q |
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| T |
16376907 |
ttttgtcttgtccgtctctgcttgtcttgaacagggatttgatttttgataaatttttccgtt |
16376969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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