View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19050_high_42 (Length: 262)
Name: NF19050_high_42
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19050_high_42 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 14854453 - 14854195
Alignment:
| Q |
1 |
tttgtcaacgtctgaagtctgtcatgtgtggtaatgaattatcaatggtatcctagnnnnnnn-ggaaattgttggtatcatgtt-ctttgtgatatcta |
98 |
Q |
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| T |
14854453 |
tttgtcaacgtctgaagtctgtcatgtgtggtaatgaattatcaatggtatcctagttttctttggaaatttttggcatcatgtttctttgtgagatcta |
14854354 |
T |
|
| Q |
99 |
cgtgtttaaggatagaatcaaaaagtggttacatatcaaatcctcacaaagttcaatcaatatatataagggacattacaacagggaagctatgcatttc |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
14854353 |
cgtgtttaaggatagaatcaaaaagtggttacatatcaaatcctcactaagttcaatcaatatatataaaggacattacaatagggaagctatgcatttc |
14854254 |
T |
|
| Q |
199 |
atgattattaaccgcatataccacctaaactacgccctttttgttctgcttcttatcac |
257 |
Q |
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|||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
14854253 |
atgattattaactgcatataccacctaaactacgtcctttctgttctgcttcttatcac |
14854195 |
T |
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