View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19050_high_44 (Length: 250)
Name: NF19050_high_44
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19050_high_44 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 47854180 - 47853942
Alignment:
| Q |
13 |
aatatggtagtaaacaagcgtaaatcaattttacatcgacattcaataaattatattgactttaatgttattgtatcgg-ttacaaggagtgtgaataat |
111 |
Q |
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| T |
47854180 |
aatatggtagtaaacaagcgtaaatcaattttacatcgacattcaataaatgatattgactttaatgttattgtatcggcttacacggagtgtgaataac |
47854081 |
T |
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| Q |
112 |
gtttaaatccatagaaaatagtgatgcacgatgcatatagttcannnnnnnnaaatgatttaatttgtacatattgacagtttaannnnnnnacacatat |
211 |
Q |
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| T |
47854080 |
gtttaaatccatagaaaatagtgatgcacgatgcatatagttcattttttttaaatgatttaatttgtacatattgacaatttaatttttttacacatat |
47853981 |
T |
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| Q |
212 |
atcaaattaaatcactttatgatgcttaggtgatatgat |
250 |
Q |
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| T |
47853980 |
atcaaattaaatcactttatgatgcttaggtgatatgat |
47853942 |
T |
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