View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19050_high_49 (Length: 245)
Name: NF19050_high_49
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19050_high_49 |
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| [»] scaffold0187 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 15 - 229
Target Start/End: Complemental strand, 37884238 - 37884024
Alignment:
| Q |
15 |
ctgtgtaaatggtaagtataaaaaattaattaaagcattgcaatatattgaattgannnnnnnnnnnnnnnnnnnnntcttacataaagaaggatgaaca |
114 |
Q |
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| T |
37884238 |
ctgtgtaaatggtaagtataaaaaattaattaaagcattgcaatatattgaattgaacacacacacacccccacacatcttacataaagaaagatgaaca |
37884139 |
T |
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| Q |
115 |
gagtgtataagaccatgcaaacatgcttggtattagttgaactcatgaacttatagtatagaagcaaagaatattaatgcaatatgataaatcataacct |
214 |
Q |
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| T |
37884138 |
gagtgtataagaccatgcaaacatgcttggtattagttgaactcatgaacttatagtgtagaagcaaagaatattaatgcaatatgacaaatcataacct |
37884039 |
T |
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| Q |
215 |
ctagaaacatcaatg |
229 |
Q |
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| T |
37884038 |
ctagaaacatcaatg |
37884024 |
T |
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Target: scaffold0187 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 14019 - 13943
Alignment:
| Q |
145 |
tattagttgaactcatgaacttatagtatagaagcaaagaatattaatgcaatatgataaatcataacctctagaaa |
221 |
Q |
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| T |
14019 |
tattatttgaactcatgaacttatagtgcagaagcaaataatattaacgcaatataataaatgataatctctagaaa |
13943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 24347 - 24271
Alignment:
| Q |
145 |
tattagttgaactcatgaacttatagtatagaagcaaagaatattaatgcaatatgataaatcataacctctagaaa |
221 |
Q |
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||||| ||||||||||||||||||||| ||||||||| |||||||| ||||||| |||||| |||| ||||||||| |
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| T |
24347 |
tattatttgaactcatgaacttatagtgcagaagcaaataatattaacgcaatataataaatgataatctctagaaa |
24271 |
T |
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