View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19050_high_50 (Length: 243)

Name: NF19050_high_50

Description: NF19050

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19050_high_50

[»] chr4 (1 HSPs)

[»] chr2 (1 HSPs)

Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 200; E-Value: 1e-109

Query Start/End: Original strand, 29 - 228

Target Start/End: Complemental strand, 24400848 - 24400649

Alignment:

Q	29	aataggaatttaggaatattagtttgtgaaaggtagggtgttaaatatttacaagttttcttcgtcaattgagccaccataaaccacagattcttgaacc	128	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	24400848	aataggaatttaggaatattagtttgtgaaaggtagggtgttaaatatttacaagttttcttcgtcaattgagccaccataaaccacagattcttgaacc	24400749	T

Q	129	ttttgatcatcaagaagtttcattaatctagttaagtgttgtttattaactatccttgctatagtgttggaatgttgtgggttgtctccaaacattttct	228	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	24400748	ttttgatcatcaagaagtttcattaatctagttaagtgttgtttattaactatccttgctatagtgttggaatgttgtgggttgtctccaaacattttct	24400649	T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 36; E-Value: 0.00000000002

Query Start/End: Original strand, 165 - 228

Target Start/End: Complemental strand, 41844766 - 41844703

Alignment:

Q	165	tgttgtttattaactatccttgctatagtgttggaatgttgtgggttgtctccaaacattttct	228	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\| \| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41844766	tgttgtttattaacaatccttgcaatggtattggattcttttgggttgtctccaaacattttct	41844703	T

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