View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19050_high_51 (Length: 241)
Name: NF19050_high_51
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19050_high_51 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 47853882 - 47853664
Alignment:
| Q |
8 |
ttttttaaaaatatagggattattcgaaggcacgaaagcatacagaaaggaaaatgggcagctgctgctattccgtccagaagaaaatgctattcgcatg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47853882 |
ttttttaaaaatatagggattattcgaaggcacgaaagcatacagaaaggaaaatgggcagctgctgctattccgtccagaagaaaatgctattcgcatg |
47853783 |
T |
|
| Q |
108 |
aagattggtgctgaaagaatgtgcatgacagcaccttccattgatcaatttgttgatgccttgaagcaaactgctctagcaaataagcgttgggtacgta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47853782 |
aagattggtgctgaaagaatgtgcatgacagcaccttccattgatcaatttgttgatgccttgaagcaaactgctctagcaaataagcgttgggtacgta |
47853683 |
T |
|
| Q |
208 |
agagttattcctcatgtgt |
226 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
47853682 |
agagttattcctcatgtgt |
47853664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University