View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19050_high_55 (Length: 234)
Name: NF19050_high_55
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19050_high_55 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 10 - 219
Target Start/End: Complemental strand, 13930109 - 13929900
Alignment:
| Q |
10 |
gagtgagatgaacatcaggcagtaacaacaatgaacgcactggtgatgatcttctgttgaaagcatttcaattccaaaaattaactattctaattttaca |
109 |
Q |
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| T |
13930109 |
gagtgagaagaacatcaggcagtaacaacaatgaacgcactggtgatgatcttctgttgaaagcatttcaattccaaaaattaactattctaattttaca |
13930010 |
T |
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| Q |
110 |
cactcagacaaaaacagtctcaaaaattaacacccatgctgattaacctaaactgacaatgatatcaagatcaatgatataaaaaatttgagatctggca |
209 |
Q |
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| T |
13930009 |
cactcagacaaaaacagtctcaaaaattaacacccatgctgattaacctaaactgacaatgatatcaagatcaatgatataaaaaatttgagatctggca |
13929910 |
T |
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| Q |
210 |
caatagaaat |
219 |
Q |
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|||||||||| |
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| T |
13929909 |
caatagaaat |
13929900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 10 - 219
Target Start/End: Original strand, 37473113 - 37473322
Alignment:
| Q |
10 |
gagtgagatgaacatcaggcagtaacaacaatgaacgcactggtgatgatcttctgttgaaagcatttcaattccaaaaattaactattctaattttaca |
109 |
Q |
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|||| ||| ||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37473113 |
gagtaagaagaacatcaggccgtaacaacaatgaacgcactgttgatgatcttttgttgaaagcatttcaattccaaaaattaactattctaattctaca |
37473212 |
T |
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| Q |
110 |
cactcagacaaaaacagtctcaaaaattaacacccatgctgattaacctaaactgacaatgatatcaagatcaatgatataaaaaatttgagatctggca |
209 |
Q |
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| T |
37473213 |
cactcagacaaaaacaatcccacaaattaacacccatgttgattaacctaaactgacaatgatagcaagatcagtgatataaaaaatttgagatctggca |
37473312 |
T |
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| Q |
210 |
caatagaaat |
219 |
Q |
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|||||||||| |
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| T |
37473313 |
caatagaaat |
37473322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 59 - 205
Target Start/End: Original strand, 33956849 - 33956995
Alignment:
| Q |
59 |
tcttctgttgaaagcatttcaattccaaaaattaactattctaattttacacactcagacaaaaacagtctcaaaaattaacacccatgctgattaacct |
158 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||| | |||||||||||| |||||||||||||||| |
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| T |
33956849 |
tcttatgttgaaagcatttcaattccacaaattaactattctaattctacacactcggacaaaaacagacccaaaaattaacatccatgctgattaacct |
33956948 |
T |
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| Q |
159 |
aaactgacaatgatatcaagatcaatgatataaaaaatttgagatct |
205 |
Q |
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| T |
33956949 |
aaactgacattgatagcaagatcggtgatatcaaaaattcgagatct |
33956995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 42055537 - 42055606
Alignment:
| Q |
138 |
aacacccatgctgattaacctaaactgacaatgatatcaagatcaatgatataaaaaatttgagatctgg |
207 |
Q |
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||||| |||||||||||| ||||||||||| ||||| ||||||| |||||| |||||| ||||||||| |
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| T |
42055537 |
aacacacatgctgattaatctaaactgacactgataacaagatcggtgatatcgaaaattcgagatctgg |
42055606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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