View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19050_high_59 (Length: 222)
Name: NF19050_high_59
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19050_high_59 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 206
Target Start/End: Original strand, 8317133 - 8317327
Alignment:
| Q |
12 |
atcaaaaactgcaattggtcgggtggaaaagatcttattttagaagctcctctacttgaaattgtttccatagaacaagacattgaattttattatgcgg |
111 |
Q |
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| T |
8317133 |
atcaaaaactgcaattggtcgggtggaaaagatcttattgtagaagctcctctacttgaaattgtttccatagaacaagacattgaattttataatgcgg |
8317232 |
T |
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| Q |
112 |
catcccatgacctacatagccaatccatcaaattcaatgctttgcatctcaagcaattcacttactctgggtatggtacagcacaactaattcat |
206 |
Q |
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| T |
8317233 |
catcccatgacctacatagccaatccatcaaattcaatgctttgcatctcaagcaattcacttactctgggtatggtacagcacaactaattcat |
8317327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 8359064 - 8358987
Alignment:
| Q |
15 |
aaaaactgcaattggtcgggtggaaaagatcttattttagaagctcctctacttgaaattgtttccatagaacaagac |
92 |
Q |
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| T |
8359064 |
aaaaactgcatttggtgtggtagaaaagatcttatcgtacaagctcctcttcttgaaaacatttccatagaacaagac |
8358987 |
T |
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