View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19050_high_6 (Length: 572)
Name: NF19050_high_6
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19050_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 2349130 - 2348867
Alignment:
| Q |
19 |
tgtttgccactaaaaattgggaggtgaccaagtattggccatgcacctttagctatgggtgcttctttgtttttgctgttagaaaattttgagagtccaa |
118 |
Q |
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| T |
2349130 |
tgtttgccactaaaaattgggaggtgaccaagtattggccatgcacctttagctatgggtgcttctttgtttttgctgtgagaaaattttgagagtccaa |
2349031 |
T |
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| Q |
119 |
atagaaataaacataggggaattagagaaattaggagtgcaattgttgtagcgtttattaaactgcttaaatctaaatccattgtagctagatggtgttg |
218 |
Q |
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| T |
2349030 |
atagaaataaacataggggaattagagaaattaggagtgcaattgttgtggcgtttattaaactgcttaaatctaaatccattgtagctagatggtgttg |
2348931 |
T |
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| Q |
219 |
tgttttggatgaggttggtggatagaagtagaatt--agttgtattactcttgaatgctagctt |
280 |
Q |
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| T |
2348930 |
tgttttgtacgaggttggtggatagaagtagaattagagttgtattactcttgaatgctagctt |
2348867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 345 - 558
Target Start/End: Complemental strand, 2348802 - 2348589
Alignment:
| Q |
345 |
tgtttgtggatatgtgtacaaaaaccaataatatatatctccctcacataacgtaaattataattgatcttgaacacgattttaagtgttgttttggaat |
444 |
Q |
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| T |
2348802 |
tgtttgtgaatatgtgtacaaaaaccaataatatatatctccctcacataacgtaaattataattgatcttgaacacgattttaagtgttgttttggaat |
2348703 |
T |
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| Q |
445 |
ttgaaaattaccacggctaagattatcggattgagttacgattaggtagtcatttttaagacgtttgatgacatcgtttaaagttgtgaaagacaactat |
544 |
Q |
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| T |
2348702 |
ttgaaaattaccacggctaagattatcggattgagttacgattagatagtcatttttaagacgtttgatgacatcgtttaaagttgtgaaagacaactat |
2348603 |
T |
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| Q |
545 |
caaccacatgcccc |
558 |
Q |
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| T |
2348602 |
caaccacatgcccc |
2348589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 23 - 178
Target Start/End: Complemental strand, 2305756 - 2305601
Alignment:
| Q |
23 |
tgccactaaaaattgggaggtgaccaagtattggccatgcacctttagctatgggtgcttctttgtttttgctgttagaaaattttgagagtccaaatag |
122 |
Q |
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| T |
2305756 |
tgccactaaaaagtgagaggtgaccaagtattggccatgcaccttcggctattggtgcctctttggttttgctatgaacaaattttgagaatccaaatag |
2305657 |
T |
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| Q |
123 |
aaataaacataggggaattagagaaat-taggagtgcaattgttgtagcgtttatta |
178 |
Q |
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| T |
2305656 |
aaacaaacataggggaa-taatgaaataaaggagtgcaattgttgttgagtttatta |
2305601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 23 - 140
Target Start/End: Complemental strand, 2338077 - 2337960
Alignment:
| Q |
23 |
tgccactaaaaattgggaggtgaccaagtattggccatgcacctttagctatgggtgcttctttgtttttgctgttagaaaattttgagagtccaaatag |
122 |
Q |
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| T |
2338077 |
tgccacgaaaaagtgagagatgaccaagtattggccatgcaccttcggctattggcgcctctttatttttgctatgaacaacttttgagaatccaaatag |
2337978 |
T |
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| Q |
123 |
aaataaacataggggaat |
140 |
Q |
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| T |
2337977 |
aatcaaacataggggaat |
2337960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 489
Target Start/End: Complemental strand, 2348349 - 2348287
Alignment:
| Q |
427 |
taagtgttgttttggaatttgaaaattaccacggctaagattatcggattgagttacgattag |
489 |
Q |
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| T |
2348349 |
taagtgttgttttcgaaattgaaaatcaccatcgaaaagattatcggattgagttacgattag |
2348287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 65
Target Start/End: Complemental strand, 2355764 - 2355735
Alignment:
| Q |
36 |
tgggaggtgaccaagtattggccatgcacc |
65 |
Q |
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| T |
2355764 |
tgggaggtgaccaagtattggccatgcacc |
2355735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 23 - 207
Target Start/End: Original strand, 5806217 - 5806395
Alignment:
| Q |
23 |
tgccactaaaaattgggaggtgaccaagtattggccatgcacctttagctatgggtgcttctttgtttttgctgttagaaaattttgagagtccaaatag |
122 |
Q |
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| T |
5806217 |
tgccacaaaaaattgggaggtgaccaagtattggccatgcacctttggctattggtgcctctttgtttttgctatgagcaaatttagagaatccaaatag |
5806316 |
T |
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| Q |
123 |
aaataaacataggggaattagagaaattaggagtgcaattgttgtagcgtttattaaactgcttaaatctaaatccattgtagct |
207 |
Q |
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| T |
5806317 |
------acatagtgaaataagaaaaattaggagtgtaaatggtgtggcatttattaggctgtttagaactaaatccattttagct |
5806395 |
T |
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