View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19050_low_11 (Length: 513)

Name: NF19050_low_11
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19050_low_11
NF19050_low_11
[»] chr2 (3 HSPs)
chr2 (389-500)||(44911625-44911736)
chr2 (419-500)||(3769095-3769176)
chr2 (162-213)||(37844844-37844896)
[»] chr1 (1 HSPs)
chr1 (419-500)||(3928541-3928622)
[»] chr4 (2 HSPs)
chr4 (419-500)||(6353891-6353972)
chr4 (164-210)||(24936214-24936260)
[»] chr6 (1 HSPs)
chr6 (444-500)||(30372873-30372929)
[»] chr7 (2 HSPs)
chr7 (164-227)||(1431428-1431492)
chr7 (165-226)||(27481415-27481481)
[»] chr3 (2 HSPs)
chr3 (171-211)||(32417255-32417295)
chr3 (420-499)||(36501298-36501377)


Alignment Details
Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 389 - 500
Target Start/End: Original strand, 44911625 - 44911736
Alignment:
Q  389 gcctatgctttcaaagcatcatcatgtttatcaaaattatttcacaccatcacagagggtcaggaatttaactaccataaaacctccaatttaccgttca 488  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44911625 gcctatgctttcaaagcatcatcatgtttatcaaaattatttcacaccatgacagagggtcaggaatttaactaccataaaacatccaatttaccgttca 44911724  T
Q  489 tgccattcatct 500  Q
    ||||||||||||    
T  44911725 tgccattcatct 44911736  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 419 - 500
Target Start/End: Complemental strand, 3769176 - 3769095
Alignment:
Q  419 tcaaaattatttcacaccatcacagagggtcaggaatttaactaccataaaacctccaatttaccgttcatgccattcatct 500  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3769176 tcaaaattatttcacaccatcacagggggtcaggaatttaactaccatagaacctccaatttaccgttcatgccattcatct 3769095  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 37844844 - 37844896
Alignment:
Q  162 tgacttatacataaacacttctaa-ataagcatttatgctataagcacttaag 213  Q
    ||||||||| |||||||||| ||  |||||| |||||||||||||||||||||    
T  37844844 tgacttatagataaacacttatatgataagcttttatgctataagcacttaag 37844896  T

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Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 419 - 500
Target Start/End: Original strand, 3928541 - 3928622
Alignment:
Q  419 tcaaaattatttcacaccatcacagagggtcaggaatttaactaccataaaacctccaatttaccgttcatgccattcatct 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||    
T  3928541 tcaaaattatttcacaccatcacagagggtcaggaatttaactaccatagaaccttcaatttaccgttcatgtcattcatct 3928622  T

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Target: chr4 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 419 - 500
Target Start/End: Original strand, 6353891 - 6353972
Alignment:
Q  419 tcaaaattatttcacaccatcacagagggtcaggaatttaactaccataaaacctccaatttaccgttcatgccattcatct 500  Q
    |||||||||||||||||||||| ||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  6353891 tcaaaattatttcacaccatcagagagggtcatgaattaaactaccatagaacctccaatttaccgttcatgccattcatct 6353972  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 24936260 - 24936214
Alignment:
Q  164 acttatacataaacacttctaaataagcatttatgctataagcactt 210  Q
    |||||||||||| ||||| || |||||| ||||||||||||||||||    
T  24936260 acttatacataaccacttatatataagcctttatgctataagcactt 24936214  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 444 - 500
Target Start/End: Complemental strand, 30372929 - 30372873
Alignment:
Q  444 agggtcaggaatttaactaccataaaacctccaatttaccgttcatgccattcatct 500  Q
    |||||||||||||||||||||||| | |||||||||||||||||||| |||||||||    
T  30372929 agggtcaggaatttaactaccatagatcctccaatttaccgttcatgtcattcatct 30372873  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 1431428 - 1431492
Alignment:
Q  164 acttatacataaacacttctaa-ataagcatttatgctataagcacttaagttatttatccaaaa 227  Q
    |||||||||||||||||| ||  ||||||| |||||||||||| ||||||||| |||||||||||    
T  1431428 acttatacataaacacttatatgataagcacttatgctataagaacttaagttgtttatccaaaa 1431492  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 27481415 - 27481481
Alignment:
Q  165 cttatacataaacacttcta-aataagcatttatgctataagcac----ttaagttatttatccaaa 226  Q
    ||||||||||||||||| || ||||| ||||||||||||||||||    ||||||| ||||||||||    
T  27481415 cttatacataaacacttatataataaacatttatgctataagcacctaattaagttgtttatccaaa 27481481  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 32417255 - 32417295
Alignment:
Q  171 cataaacacttctaaataagcatttatgctataagcactta 211  Q
    ||||||||||| || |||||||||||| |||||||||||||    
T  32417255 cataaacacttatatataagcatttatactataagcactta 32417295  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 499
Target Start/End: Complemental strand, 36501377 - 36501298
Alignment:
Q  420 caaaattatttcacaccatcacagagggtcaggaatttaactaccataaaacctccaa-tttaccgttcatgccattcatc 499  Q
    |||||| ||||||||||||| || |||| |||| ||| ||||||| |||||| ||||| |||| | |||||||||||||||    
T  36501377 caaaatcatttcacaccatcgcaaagggccagggattcaactaccctaaaac-tccaactttatccttcatgccattcatc 36501298  T

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