View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19050_low_12 (Length: 493)

Name: NF19050_low_12
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19050_low_12
NF19050_low_12
[»] chr3 (15 HSPs)
chr3 (274-477)||(34725795-34725998)
chr3 (100-262)||(38247818-38247979)
chr3 (100-262)||(50989223-50989385)
chr3 (100-262)||(51092355-51092517)
chr3 (102-262)||(8496726-8496887)
chr3 (100-262)||(48034808-48034971)
chr3 (102-262)||(12224006-12224165)
chr3 (13-99)||(34725991-34726077)
chr3 (98-262)||(9271130-9271296)
chr3 (98-183)||(54713623-54713708)
chr3 (201-262)||(33288152-33288213)
chr3 (217-262)||(23004776-23004821)
chr3 (99-170)||(46135636-46135708)
chr3 (100-169)||(40725959-40726029)
chr3 (99-166)||(23004870-23004938)
[»] chr4 (25 HSPs)
chr4 (100-262)||(25164471-25164633)
chr4 (100-262)||(37605691-37605853)
chr4 (99-262)||(55281228-55281391)
chr4 (99-262)||(17044023-17044185)
chr4 (100-261)||(45995895-45996055)
chr4 (99-262)||(43749112-43749277)
chr4 (100-262)||(3287104-3287262)
chr4 (100-261)||(5817380-5817541)
chr4 (98-183)||(39631008-39631093)
chr4 (98-262)||(51579600-51579764)
chr4 (98-175)||(24059133-24059210)
chr4 (98-159)||(5208425-5208486)
chr4 (99-148)||(51293081-51293130)
chr4 (98-172)||(14149958-14150033)
chr4 (211-262)||(51579340-51579391)
chr4 (200-262)||(42179237-42179299)
chr4 (200-262)||(50498230-50498292)
chr4 (100-172)||(48525435-48525508)
chr4 (132-262)||(26719936-26720063)
chr4 (112-175)||(32525034-32525097)
chr4 (98-183)||(9118513-9118599)
chr4 (99-172)||(40947103-40947176)
chr4 (211-262)||(20107130-20107182)
chr4 (217-261)||(25784025-25784069)
chr4 (217-261)||(32290235-32290279)
[»] chr1 (22 HSPs)
chr1 (98-262)||(1994973-1995136)
chr1 (99-262)||(27325626-27325790)
chr1 (101-261)||(29637211-29637371)
chr1 (98-262)||(44797465-44797628)
chr1 (98-261)||(2402923-2403086)
chr1 (98-261)||(32267463-32267626)
chr1 (108-261)||(1673390-1673543)
chr1 (99-178)||(40030890-40030969)
chr1 (99-183)||(15066019-15066104)
chr1 (98-172)||(19989346-19989420)
chr1 (211-262)||(26040990-26041041)
chr1 (97-166)||(526906-526976)
chr1 (200-262)||(526999-527061)
chr1 (99-172)||(47571562-47571636)
chr1 (211-260)||(6487750-6487799)
chr1 (101-262)||(29731208-29731369)
chr1 (202-262)||(7178213-7178273)
chr1 (99-166)||(13276473-13276541)
chr1 (211-262)||(13276575-13276626)
chr1 (100-166)||(46845666-46845733)
chr1 (200-262)||(46845756-46845818)
chr1 (99-166)||(40314197-40314265)
[»] chr5 (9 HSPs)
chr5 (99-262)||(13988267-13988430)
chr5 (99-262)||(36890397-36890559)
chr5 (98-262)||(11247212-11247376)
chr5 (98-175)||(20151481-20151558)
chr5 (98-262)||(12248293-12248457)
chr5 (98-166)||(15285434-15285503)
chr5 (100-183)||(1447748-1447830)
chr5 (99-172)||(8076364-8076438)
chr5 (100-261)||(43100208-43100369)
[»] chr7 (12 HSPs)
chr7 (99-262)||(33496519-33496682)
chr7 (98-262)||(46576240-46576404)
chr7 (98-262)||(30922708-30922872)
chr7 (101-262)||(51958-52118)
chr7 (100-262)||(38754897-38755057)
chr7 (104-262)||(48460679-48460830)
chr7 (98-172)||(38349457-38349532)
chr7 (98-175)||(47480012-47480090)
chr7 (99-262)||(28713697-28713860)
chr7 (211-262)||(31741063-31741114)
chr7 (212-262)||(42974490-42974540)
chr7 (98-166)||(31741148-31741217)
[»] chr2 (16 HSPs)
chr2 (99-262)||(32599247-32599410)
chr2 (100-262)||(13696965-13697127)
chr2 (100-262)||(17823599-17823761)
chr2 (100-262)||(36272661-36272823)
chr2 (98-261)||(36709190-36709352)
chr2 (98-262)||(33555360-33555525)
chr2 (98-251)||(40095294-40095446)
chr2 (99-261)||(14242523-14242676)
chr2 (100-257)||(42061237-42061388)
chr2 (100-175)||(4434592-4434667)
chr2 (100-166)||(3121715-3121782)
chr2 (195-262)||(23860259-23860326)
chr2 (99-262)||(40216429-40216592)
chr2 (100-138)||(23860198-23860236)
chr2 (225-262)||(14945861-14945898)
chr2 (211-262)||(24475812-24475863)
[»] chr6 (12 HSPs)
chr6 (100-262)||(34792651-34792813)
chr6 (99-262)||(9045853-9046015)
chr6 (98-262)||(14313985-14314148)
chr6 (97-262)||(1244553-1244718)
chr6 (98-183)||(9521810-9521895)
chr6 (98-166)||(23916077-23916146)
chr6 (98-172)||(12748321-12748396)
chr6 (211-262)||(29429604-29429655)
chr6 (100-172)||(16718106-16718179)
chr6 (226-262)||(9521943-9521979)
chr6 (200-262)||(23915992-23916054)
chr6 (100-172)||(32720468-32720541)
[»] chr8 (11 HSPs)
chr8 (98-262)||(43065903-43066066)
chr8 (99-262)||(14342186-14342351)
chr8 (99-262)||(1993638-1993802)
chr8 (98-183)||(4076767-4076852)
chr8 (100-175)||(5749029-5749104)
chr8 (100-262)||(11904873-11905035)
chr8 (211-262)||(8368482-8368533)
chr8 (200-262)||(4077061-4077123)
chr8 (98-172)||(35200665-35200740)
chr8 (212-262)||(2599551-2599601)
chr8 (212-262)||(41075709-41075759)
[»] scaffold0933 (1 HSPs)
scaffold0933 (98-251)||(3054-3204)
[»] scaffold0533 (1 HSPs)
scaffold0533 (100-262)||(10232-10393)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 274 - 477
Target Start/End: Complemental strand, 34725998 - 34725795
Alignment:
Q  274 tttagcaacgctacaaactatagctttaaaaaggacgtgcatttaagttggtatcgccgtgnnnnnnngattaaaactatagaccagcttccatgacaaa 373  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||       ||||||||||||||||||||||||||||||||    
T  34725998 tttagcaacgctacaaactatagctttatgaaggacgtgcatttaagttggtatcaccgtgaaaaaaagattaaaactatagaccagcttccatgacaaa 34725899  T
Q  374 gatgcattattgaacaagggtccatcactattttgctacaggcacagatagaaacactatccacgcactacataaaaaatacaatgataagctaagcaaa 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34725898 gatgcattattgaacaagggtccatcactattttgctacaggcacagatagaaacactatccacgcactacataaaaaatacaatgataagctaagcaaa 34725799  T
Q  474 gtag 477  Q
    ||||    
T  34725798 gtag 34725795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 100 - 262
Target Start/End: Complemental strand, 38247979 - 38247818
Alignment:
Q  100 ggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtgga 199  Q
    |||||||||||||||||||||||||||  |||||||||||| |||||||| |||||||||||||||||||||||||||| |||        ||| ||||     
T  38247979 ggataatgtttcatgtacacactttttc-catacacacattgtaccactctatgtgagagtgtgtgagagacaatacatgtgactttttttgtgtgtggg 38247881  T
Q  200 gggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    || ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38247880 ggaaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaagg 38247818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 100 - 262
Target Start/End: Complemental strand, 50989385 - 50989223
Alignment:
Q  100 ggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtgga 199  Q
    ||||||||||||||||||||| ||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||       | |  | |     
T  50989385 ggataatgtttcatgtacacatttttttttatacacacattataccacttcatgtgagagtgtgtgagagacaatacatgtgagtttttttgcgtttagg 50989286  T
Q  200 gggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  50989285 gggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaagg 50989223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 100 - 262
Target Start/End: Complemental strand, 51092517 - 51092355
Alignment:
Q  100 ggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtgga 199  Q
    ||||||||||||||||||||| ||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||       | |  | |     
T  51092517 ggataatgtttcatgtacacatttttttttatacacacattataccacttcatgtgagagtgtgtgagagacaatacatgtgagtttttttgcgtttagg 51092418  T
Q  200 gggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  51092417 gggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaagg 51092355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 102 - 262
Target Start/End: Complemental strand, 8496887 - 8496726
Alignment:
Q  102 ataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtg-gag 200  Q
    ||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||        |||||| | |    
T  8496887 ataatgtttcatgcacacactttttttcatacacacattctaccactccatgtgagagtatgtgagagacaatacatatgagtatttttttgcgtgtggg 8496788  T
Q  201 ggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    ||||||||| |||||||||||||||||| |||||||| ||||||||||||| ||||||||||    
T  8496787 ggaccacaaagacacttgtcaaaattgtatgtgggtggacaagtggtacatgccacctaagg 8496726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 100 - 262
Target Start/End: Original strand, 48034808 - 48034971
Alignment:
Q  100 ggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgt-gg 198  Q
    ||||||||||| |||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||       ||| || ||    
T  48034808 ggataatgttttatgtacacacttttttccatacacacattgtaccacttcatgtgagagtgtgtgagagacaatacatttgagtttttttgtgtgtggg 48034907  T
Q  199 agggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
     |||||||||| |||||||||||||||||| ||||||||||||||||||||||  |||||||||    
T  48034908 ggggaccacaaggacacttgtcaaaattgtatgtgggtgtacaagtggtacatgtcacctaagg 48034971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 102 - 262
Target Start/End: Original strand, 12224006 - 12224165
Alignment:
Q  102 ataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtggagg 201  Q
    |||||||||||||||||||||||||| ||||||||| || ||||||| || |||||||||||||||||||||||||| ||||       ||| |||  ||    
T  12224006 ataatgtttcatgtacacacttttttccatacacac-ttgtaccacttcaggtgagagtgtgtgagagacaatacatgtgagttttcttgtgtgtgaggg 12224104  T
Q  202 gaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  12224105 gaccacaaggacacttgtcaaaattgtgtgtgggtgtacaaatggtacatgccacctaagg 12224165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 34726077 - 34725991
Alignment:
Q  13 aatatgcaagttagtgtatgtttggaaagtcagacgtctcttaaattctcgcgtcctaatgtactatcattacagcggttttagcaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34726077 aatatgcaagttagtgtatgtttggaaagtcagacgtctcttaaattctcgcgtcctaatgtactatcattacagcggttttagcaa 34725991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 98 - 262
Target Start/End: Complemental strand, 9271296 - 9271130
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgag--nnnnnnngtgcg 195  Q
    |||||||||||||||||||||||||||||| |||||| | ||| ||||||| ||||| |||||||||||| |||||||||| ||||         ||| |    
T  9271296 aaggataatgtttcatgtacacactttttttcatacatatattgtaccacttcatgtaagagtgtgtgagggacaatacatgtgagtttttttgtgtgtg 9271197  T
Q  196 tggagggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||| ||||||    
T  9271196 tggagggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaagg 9271130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 98 - 183
Target Start/End: Complemental strand, 54713708 - 54713623
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgag 183  Q
    ||||||||| |||||||||||| ||||||| || ||| ||||||||  || ||||||||||||||||||||||||||| |||||||    
T  54713708 aaggataatatttcatgtacacccttttttccacacatacattatataaccccatgtgagagtgtgtgagagacaataaatatgag 54713623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 33288213 - 33288152
Alignment:
Q  201 ggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    ||||||||  ||||| | ||| ||||||||||||||||||||||||||||||||||||||||    
T  33288213 ggaccacatagacacatatcacaattgtgtgtgggtgtacaagtggtacataccacctaagg 33288152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 23004821 - 23004776
Alignment:
Q  217 tgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||    
T  23004821 tgtcacaattgtgtgtgggtgtacaagtggtacatgccacctaagg 23004776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 170
Target Start/End: Complemental strand, 46135708 - 46135636
Alignment:
Q  99 aggataatgtttcatgtacacacttttttgcatacacacattataccactcc-atgtgagagtgtgtgagaga 170  Q
    |||||||||||||||| |||   |||| | |||||||||||| |||||| || ||||||||||||||||||||    
T  46135708 aggataatgtttcatgaacatcattttctccatacacacattgtaccacccctatgtgagagtgtgtgagaga 46135636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 40726029 - 40725959
Alignment:
Q  100 ggataatgtttcatgtacacacttttttgcatacacacattataccactcc-atgtgagagtgtgtgagag 169  Q
    ||||||||||||||| ||||| |||||| |||||||||  | || |||||| |||||||| ||||||||||    
T  40726029 ggataatgtttcatggacacattttttttcatacacactatgtatcactcctatgtgagaatgtgtgagag 40725959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 23004938 - 23004870
Alignment:
Q  99 aggataatgtttcatgtacacacttttttgcatacacacattataccac-tccatgtgagagtgtgtga 166  Q
    |||||||||||||||| |||| ||||| | |||||||||  |  ||||| |||||||||||||||||||    
T  23004938 aggataatgtttcatgaacacccttttctccatacacactatgcaccacttccatgtgagagtgtgtga 23004870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 5e-60; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 100 - 262
Target Start/End: Original strand, 25164471 - 25164633
Alignment:
Q  100 ggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtgga 199  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||       ||| |||||    
T  25164471 ggataatgtttcatgtacacacttttttgcatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtgagtttttttgtgtgtgga 25164570  T
Q  200 gggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    || ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25164571 ggaaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaagg 25164633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 100 - 262
Target Start/End: Original strand, 37605691 - 37605853
Alignment:
Q  100 ggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtgga 199  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||| |||        ||| ||||     
T  37605691 ggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgagggacaatacatgtgactttttttgtgtgtggg 37605790  T
Q  200 gggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37605791 gggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaagg 37605853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 99 - 262
Target Start/End: Complemental strand, 55281391 - 55281228
Alignment:
Q  99 aggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtgg 198  Q
    ||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||| ||||||||||||||||||| |||        ||| ||||    
T  55281391 aggataatgtttcatgtacacacttttttccatacatacattgtaccactccatgtgagaatgtgtgagagacaatacatgtgactttttttgtgtgtgg 55281292  T
Q  199 agggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
     |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  55281291 ggggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaagg 55281228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 99 - 262
Target Start/End: Complemental strand, 17044185 - 17044023
Alignment:
Q  99 aggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtgg 198  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||  ||        ||| ||||    
T  17044185 aggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgggactttttttgtgtgtgg 17044086  T
Q  199 agggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
     || ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17044085 -ggaaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaagg 17044023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 100 - 261
Target Start/End: Original strand, 45995895 - 45996055
Alignment:
Q  100 ggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtgga 199  Q
    ||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||       ||| ||||     
T  45995895 ggataatgtttcatgtacacatttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtgagtttttttgtgtgtgg- 45995993  T
Q  200 gggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaag 261  Q
    | ||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  45995994 gagaccacaagaacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaag 45996055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 99 - 262
Target Start/End: Complemental strand, 43749277 - 43749112
Alignment:
Q  99 aggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtg- 197  Q
    ||||||||||||||||||||||||||||| |||||| | ||| ||||||||||||| |||||||||||| ||||||| || ||||       ||| |||     
T  43749277 aggataatgtttcatgtacacactttttttcatacatatattgtaccactccatgtaagagtgtgtgagggacaatatatgtgagcttttttgtgtgtgt 43749178  T
Q  198 -gagggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
     |||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  43749177 ggagggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccacctaagg 43749112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 100 - 262
Target Start/End: Complemental strand, 3287262 - 3287104
Alignment:
Q  100 ggataatgtttcatgtacacacttttttgc-atacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtgg 198  Q
    |||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||| |||||    |||        || ||||    
T  3287262 ggataatgtttcatgtacacactttttttccatacacacattgtaccactccatgtgagagtgtgtgagagataatac----gagttttttt-tgtgtgg 3287168  T
Q  199 agggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    || |||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3287167 agagaccacaaggactcttgtcaaaattgtgtgtgggtgtacaagtggtacataccatctaagg 3287104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 100 - 261
Target Start/End: Original strand, 5817380 - 5817541
Alignment:
Q  100 ggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtgga 199  Q
    |||||||||||||||||||  ||||| | |||||||||||| |||||| |||||| | |||||||  ||||||||| |||||||       ||| |||      
T  5817380 ggataatgtttcatgtacatccttttctccatacacacattgtaccaccccatgtaaaagtgtgtaggagacaataaatatgagttttttggtgtgtgtg 5817479  T
Q  200 gggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaag 261  Q
    |||||||||  ||||| ||||| ||||||||||||||||||||||||||||| |||||||||    
T  5817480 gggaccacatggacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccacctaag 5817541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 39631008 - 39631093
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgag 183  Q
    ||||||||||||||||||||| |||||||| |||| ||||||| |||||||| |||||||||||||||||||||||||||| ||||    
T  39631008 aaggataatgtttcatgtacatacttttttccatatacacattgtaccactctatgtgagagtgtgtgagagacaatacatgtgag 39631093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 98 - 262
Target Start/End: Complemental strand, 51579764 - 51579600
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtg 197  Q
    ||||||||||||| ||||| ||||||| || |||||||||||| |||||| |||||||||||||||| |||||||||| || ||||       ||  |||    
T  51579764 aaggataatgttttatgtaaacactttctttcatacacacattgtaccaccccatgtgagagtgtgtaagagacaataaatgtgagtttttttgtatgtg 51579665  T
Q  198 gagggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
      || | ||||  ||||| ||||| |||||| | |||||||||||||||||||| ||||||||||    
T  51579664 tgggaatcacatggacacatgtcacaattgtatttgggtgtacaagtggtacatgccacctaagg 51579600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 24059133 - 24059210
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaata 175  Q
    ||||||||||||| ||||||||||||| || |||||||||||| |||||| |||||| ||||||||| ||||||||||    
T  24059133 aaggataatgttttatgtacacactttcttccatacacacattgtaccaccccatgtaagagtgtgtaagagacaata 24059210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 5208486 - 5208425
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagag 159  Q
    ||||||||||||| |||||||||||||||| |||||||| ||| ||||||||||||||||||    
T  5208486 aaggataatgttttatgtacacactttttttcatacacatattgtaccactccatgtgagag 5208425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 51293081 - 51293130
Alignment:
Q  99 aggataatgtttcatgtacacacttttttgcatacacacattataccact 148  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  51293081 aggataatgtttcatgtacacactttttttcatacacacattgtaccact 51293130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 14149958 - 14150033
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccac-tccatgtgagagtgtgtgagagaca 172  Q
    ||||||||||||||||| |||| ||||| |  ||||||||||| |||||| ||||||||| ||||| |||||||||    
T  14149958 aaggataatgtttcatgaacacccttttctctatacacacattgtaccacttccatgtgaaagtgtttgagagaca 14150033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 51579391 - 51579340
Alignment:
Q  211 gacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    ||||| ||||| |||||| |||||||||||||||||||||| ||||||||||    
T  51579391 gacacatgtcacaattgtatgtgggtgtacaagtggtacatgccacctaagg 51579340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 262
Target Start/End: Original strand, 42179237 - 42179299
Alignment:
Q  200 gggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    |||||||||  ||||| ||||| |||||||  |||||||| ||||||||||||||||||||||    
T  42179237 gggaccacatggacacatgtcacaattgtgcatgggtgtataagtggtacataccacctaagg 42179299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 262
Target Start/End: Complemental strand, 50498292 - 50498230
Alignment:
Q  200 gggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    |||||||||  ||||| ||||| |||||||| |||||||| ||||||||||||| ||||||||    
T  50498292 gggaccacatggacacatgtcacaattgtgtatgggtgtataagtggtacatactacctaagg 50498230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 48525508 - 48525435
Alignment:
Q  100 ggataatgtttcatgtacacacttttttgcatacacacattataccact-ccatgtgagagtgtgtgagagaca 172  Q
    ||||||||||||||| |||| ||||  |  ||||||||||| ||||||| |||||||||||||| |||||||||    
T  48525508 ggataatgtttcatgaacaccctttcctctatacacacattgtaccacttccatgtgagagtgtttgagagaca 48525435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 262
Target Start/End: Original strand, 26719936 - 26720063
Alignment:
Q  132 acacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtggagggaccacaatgacacttgtcaaaattgtgtg 231  Q
    ||||||||| |||||| |||||||| |||||||||||||||  | || ||||       |||||||  |||||||||| ||||| ||| | |||||  ||    
T  26719936 acacacattgtaccaccccatgtgacagtgtgtgagagacacaaaatgtgag---ttttgtgcgtgtggggaccacaaagacacatgttacaattgaatg 26720032  T
Q  232 tgggtgtacaagtggtacataccacctaagg 262  Q
    |||||||| ||||||||||  ||||||||||    
T  26720033 tgggtgtagaagtggtacacgccacctaagg 26720063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 175
Target Start/End: Original strand, 32525034 - 32525097
Alignment:
Q  112 atgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaata 175  Q
    ||||||||  |||||| |||||||||||| || ||| |||| ||||||||||||||||| ||||    
T  32525034 atgtacacctttttttccatacacacattgtatcaccccatatgagagtgtgtgagagataata 32525097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 9118513 - 9118599
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccac-tccatgtgagagtgtgtgagagacaatacatatgag 183  Q
    ||||||||| ||||||| |||| ||||  | |||||| ||| | |||||| | |||||||||||| ||||||||||||| |||||||    
T  9118513 aaggataatatttcatgaacaccctttcctccatacatacaatgtaccacattcatgtgagagtgcgtgagagacaataaatatgag 9118599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 40947103 - 40947176
Alignment:
Q  99 aggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagaca 172  Q
    |||||||||||| ||| |||| ||||||| |||| | | ||| ||||| | ||| |||||||||||||||||||    
T  40947103 aggataatgttttatggacactctttttttcatataaatattgtaccatttcatatgagagtgtgtgagagaca 40947176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 20107182 - 20107130
Alignment:
Q  211 gacacttgtcaaaattgtgtgtggg-tgtacaagtggtacataccacctaagg 262  Q
    ||||| ||||| ||||||||| ||| |||||||||||||||| ||||||||||    
T  20107182 gacacatgtcacaattgtgtgcggggtgtacaagtggtacatgccacctaagg 20107130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 25784025 - 25784069
Alignment:
Q  217 tgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaag 261  Q
    ||||| |||| ||||||| |||||||||||||||| |||||||||    
T  25784025 tgtcacaattatgtgtggatgtacaagtggtacatgccacctaag 25784069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 32290279 - 32290235
Alignment:
Q  217 tgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaag 261  Q
    ||||| |||||||| |||||||| ||||||||||| |||||||||    
T  32290279 tgtcacaattgtgtatgggtgtataagtggtacatgccacctaag 32290235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 98 - 262
Target Start/End: Complemental strand, 1995136 - 1994973
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtg 197  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||       ||| |||    
T  1995136 aaggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtgagtttttttgtgtgtg 1995037  T
Q  198 gagggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    || ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1995036 ga-ggaccacaaagacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaagg 1994973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 99 - 262
Target Start/End: Original strand, 27325626 - 27325790
Alignment:
Q  99 aggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtg-agagtgtgtgagagacaatacatatgagnnnnnnngtgcgtg 197  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||| |||        ||| |||    
T  27325626 aggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgaagagtgtgtgagagacaatacatgtgactttttttgtgtgtg 27325725  T
Q  198 gagggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    | || ||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  27325726 ggggaaccacaaggacacttatcaaaattgtgtgtgggtgtacaagtggtacatgccacctaagg 27325790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 101 - 261
Target Start/End: Original strand, 29637211 - 29637371
Alignment:
Q  101 gataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtggag 200  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||  ||| |||||||||| |||||||||||||||||||       ||| ||||      
T  29637211 gataatgtttcatgtacacactttttttcatacacacattgtaccaccacatatgagagtgtgagagagacaatacatatgagtttttttgtgtgtggga 29637310  T
Q  201 ggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaag 261  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29637311 ggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaag 29637371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 98 - 262
Target Start/End: Original strand, 44797465 - 44797628
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtg 197  Q
    ||||||||||||||||||||||||||||||  ||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||       |||  ||    
T  44797465 aaggataatgtttcatgtacacacttttttctatacacacattgtaccacttcatgtgagagtgtgtgagagacaatacatgtgagtttttttgtgtttg 44797564  T
Q  198 gagggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    | |||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  44797565 g-gggaccacaaggacacttatcaaaattgtgtgtgggtgtacaagtggtacatgccacctaagg 44797628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 98 - 261
Target Start/End: Original strand, 2402923 - 2403086
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtg 197  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||| |||||||||||||| ||||        || |||    
T  2402923 aaggataatgtttcatgtacacacttttttccatacacacattgtaccattccatgtgagagtgtgcgagagacaatacatgtgagtttttttttgtgtg 2403022  T
Q  198 gagggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaag 261  Q
    | ||||||||||  |||||| ||||||||||||||||||||||||||||||||| ||| |||||    
T  2403023 gggggaccacaagaacacttttcaaaattgtgtgtgggtgtacaagtggtacatgccatctaag 2403086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 98 - 261
Target Start/End: Original strand, 32267463 - 32267626
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtg 197  Q
    ||||||||| |||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||| |||||||| ||||       ||  |||    
T  32267463 aaggataatatttcatgtacacacttttttccatacacacattgtactactccatgtgagagtgtgtgagagccaatacatgtgagtttttttgtatgtg 32267562  T
Q  198 gagggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaag 261  Q
    || ||||||||| |||||||||||||||||||||||||||||||| | |||||| |||| ||||    
T  32267563 gaaggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaaattgtacatgccacttaag 32267626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 108 - 261
Target Start/End: Complemental strand, 1673543 - 1673390
Alignment:
Q  108 tttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtggagggaccac 207  Q
    |||||||||||||||||||| |||||||||||| ||||| | ||||| ||||||| ||||||||||||||||||||       ||  || | || |||||    
T  1673543 tttcatgtacacacttttttccatacacacattgtaccatttcatgtaagagtgtatgagagacaatacatatgagtttttttgtatgtaggggaaccac 1673444  T
Q  208 aatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaag 261  Q
    || ||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  1673443 aaggacacttatcaaaattgtgtgtgggtgtacaagtggtacatgccacctaag 1673390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 40030969 - 40030890
Alignment:
Q  99 aggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacat 178  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40030969 aggataatgtttcatgtacacactttttttcatacacacattgtaccactccatgtgagagtgtgtgagagacaatacat 40030890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 15066019 - 15066104
Alignment:
Q  99 aggataatgtttcatgtacacacttttttgcatacacacattataccactc-catgtgagagtgtgtgagagacaatacatatgag 183  Q
    |||||||||||||||| |||| ||||||| |||||| ||| | |||||||| |||||||||||||||||||||||||| |||||||    
T  15066019 aggataatgtttcatgaacactcttttttccatacatacaatgtaccactctcatgtgagagtgtgtgagagacaataaatatgag 15066104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 19989420 - 19989346
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccactc-catgtgagagtgtgtgagagaca 172  Q
    ||||||||||||||||  |||| ||||| | |||||||||||| |||||||| |||||||||||||||||||||||    
T  19989420 aaggataatgtttcatagacactcttttct-catacacacattgtaccactctcatgtgagagtgtgtgagagaca 19989346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 26041041 - 26040990
Alignment:
Q  211 gacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    ||||| ||||| |||||| |||||||||||||||||||||| ||||||||||    
T  26041041 gacacatgtcacaattgtatgtgggtgtacaagtggtacatgccacctaagg 26040990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 526906 - 526976
Alignment:
Q  97 caaggataatgtttcatgtacacacttttttgcatacacacattataccac-tccatgtgagagtgtgtga 166  Q
    |||||||||||||||||| |||| ||||| | |||||||||  | |||||| |||||||||||||||||||    
T  526906 caaggataatgtttcatgaacacccttttctccatacacactatgtaccacttccatgtgagagtgtgtga 526976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 262
Target Start/End: Original strand, 526999 - 527061
Alignment:
Q  200 gggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    |||||||||  ||||| ||||| |||||||| |||||||| ||||||||||| ||||||||||    
T  526999 gggaccacatggacacatgtcacaattgtgtatgggtgtataagtggtacatgccacctaagg 527061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 47571562 - 47571636
Alignment:
Q  99 aggataatgtttcatgtacacacttttttgcatacacacattataccac-tccatgtgagagtgtgtgagagaca 172  Q
    |||||||||||||||| |||| ||||  |  ||||||||||| |||||| ||||||||||||||| |||||||||    
T  47571562 aggataatgtttcatgaacaccctttcctctatacacacattgtaccacttccatgtgagagtgtttgagagaca 47571636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 6487799 - 6487750
Alignment:
Q  211 gacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaa 260  Q
    ||||| ||||| |||||||||||| |||||||||||||||| ||||||||    
T  6487799 gacacatgtcacaattgtgtgtggatgtacaagtggtacatgccacctaa 6487750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 262
Target Start/End: Complemental strand, 29731369 - 29731208
Alignment:
Q  101 gataatgtttcatgtacacacttttttgcatacacacattataccact-ccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtgga 199  Q
    |||||||||||||| |||| ||||| |  ||||||||||| || |||| |||||||||||||| |||||||||  | | ||||        ||| ||| |    
T  29731369 gataatgtttcatgaacacccttttctctatacacacattgtatcacttccatgtgagagtgtttgagagacacaaaagatga-atttcttgtgtgtgta 29731271  T
Q  200 gggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    |||||||||  ||||| ||||| |||| | ||||||||||| ||||||| || ||||||||||    
T  29731270 gggaccacatggacacatgtcacaattatatgtgggtgtactagtggtatatgccacctaagg 29731208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 7178213 - 7178273
Alignment:
Q  202 gaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    |||||||  ||||||||||| |||||| ||||||||||||| ||||||||  |||||||||    
T  7178213 gaccacatagacacttgtcacaattgtatgtgggtgtacaaatggtacatgtcacctaagg 7178273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 13276473 - 13276541
Alignment:
Q  99 aggataatgtttcatgtacacacttttttgcatacacacattataccact-ccatgtgagagtgtgtga 166  Q
    |||||||||||||||| |||| ||||| | |||||||||  | ||||||| ||||||||||||||||||    
T  13276473 aggataatgtttcatgaacacccttttctccatacacactatgtaccactcccatgtgagagtgtgtga 13276541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 13276575 - 13276626
Alignment:
Q  211 gacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    ||||| ||||| |||||||| || ||||| ||||||||||||||||||||||    
T  13276575 gacacatgtcataattgtgtatgagtgtataagtggtacataccacctaagg 13276626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 46845666 - 46845733
Alignment:
Q  100 ggataatgtttcatgtacacacttttttgcatacacacattataccact-ccatgtgagagtgtgtga 166  Q
    ||||||||||||||| |||| ||||| ||||||||||   | ||||||| ||||||||||||||||||    
T  46845666 ggataatgtttcatgaacacccttttctgcatacacattatgtaccactcccatgtgagagtgtgtga 46845733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 262
Target Start/End: Original strand, 46845756 - 46845818
Alignment:
Q  200 gggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    |||||||||  ||||| ||||| |||||||| |||||||| ||||||||||| ||| ||||||    
T  46845756 gggaccacatggacacatgtcacaattgtgtatgggtgtataagtggtacatgccatctaagg 46845818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 40314265 - 40314197
Alignment:
Q  99 aggataatgtttcatgtacacacttttttgcatacacacattataccact-ccatgtgagagtgtgtga 166  Q
    |||||||||||||||| ||||  |||||| |||||| ||  ||||||||| |||| |||||||||||||    
T  40314265 aggataatgtttcatgaacaccattttttccatacatactatataccactcccatatgagagtgtgtga 40314197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 8e-56; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 99 - 262
Target Start/End: Complemental strand, 13988430 - 13988267
Alignment:
Q  99 aggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtgg 198  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||        ||| ||||    
T  13988430 aggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtgactttttttgtgtgtgg 13988331  T
Q  199 agggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
     |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13988330 ggggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaagg 13988267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 99 - 262
Target Start/End: Complemental strand, 36890559 - 36890397
Alignment:
Q  99 aggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtgg 198  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||| ||||||||||||||| ||||       ||| ||||    
T  36890559 aggataatgtttcatgtacacacttttttccatacacacattgtaccactcgatgtgagagtgtatgagagacaatacatgtgagtttttttgtgtgtgg 36890460  T
Q  199 agggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
     |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36890459 -gggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaagg 36890397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 98 - 262
Target Start/End: Complemental strand, 11247376 - 11247212
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtg 197  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||       ||| ||     
T  11247376 aaggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtgagtttttttgtgtgta 11247277  T
Q  198 gagggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    | |||| ||||| |||| ||||||||||||||||||| ||||||||| ||| || ||| ||||||    
T  11247276 gggggatcacaaagacatttgtcaaaattgtgtgtggatgtacaagtagtatatgccatctaagg 11247212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 20151558 - 20151481
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaata 175  Q
    ||||||||| ||||||||||||  |||||| |||||| |||||||||||| |||||||||||||||||||||||||||    
T  20151558 aaggataatatttcatgtacacctttttttccatacatacattataccaccccatgtgagagtgtgtgagagacaata 20151481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 98 - 262
Target Start/End: Complemental strand, 12248457 - 12248293
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccac-tccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgt 196  Q
    ||||||||||||||||| |||| ||||| |  ||||||||||| |||||| ||||||||| ||||| |||||||||  | | |||||       ||||||    
T  12248457 aaggataatgtttcatgaacacccttttctctatacacacattgtaccacttccatgtgatagtgtttgagagacacaaaagatgag-tttcttgtgcgt 12248359  T
Q  197 ggagggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    | ||||||||||  ||||| ||||| |||| | ||||| ||||||||||||| || ||||||||||    
T  12248358 gtagggaccacatggacacatgtcacaattatatgtggatgtacaagtggtatatgccacctaagg 12248293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 15285503 - 15285434
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccact-ccatgtgagagtgtgtga 166  Q
    ||||||||||||||||| |||| ||||| |||||||||||  | ||||||| ||||||||||||||||||    
T  15285503 aaggataatgtttcatgaacacccttttctgcatacacactatgtaccactcccatgtgagagtgtgtga 15285434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 1447748 - 1447830
Alignment:
Q  100 ggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgag 183  Q
    ||||||||||||||| |||| |||||||  |||||||| || |||||  | |||||||||||| |||||||||||| |||||||    
T  1447748 ggataatgtttcatgaacac-cttttttctatacacacgttgtaccatccaatgtgagagtgtatgagagacaataaatatgag 1447830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 8076438 - 8076364
Alignment:
Q  99 aggataatgtttcatgtacacacttttttgcatacacacattataccac-tccatgtgagagtgtgtgagagaca 172  Q
    |||||||||||||||| |||| ||||| |  ||||| ||||| |||||| ||||||||||||||| |||||||||    
T  8076438 aggataatgtttcatgaacacccttttctctatacatacattgtaccacttccatgtgagagtgtttgagagaca 8076364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 261
Target Start/End: Original strand, 43100208 - 43100369
Alignment:
Q  100 ggataatgtttcatgtacacacttttttgcatacacacattataccactc-catgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtgg 198  Q
    ||||||||||||||| |||| ||||| |  ||||||||||| |||||||  ||||||| ||||| |||||||||  | | ||||        ||| |||     
T  43100208 ggataatgtttcatgaacacccttttctctatacacacattgtaccactttcatgtgatagtgtttgagagacacaaaagatga-atttcttgtgtgtgt 43100306  T
Q  199 agggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaag 261  Q
    || |||||||  ||||| ||||| |||| | ||||||||||||||||||| ||||||||||||    
T  43100307 agagaccacatggacacatgtcacaattatatgtgggtgtacaagtggtatataccacctaag 43100369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 99 - 262
Target Start/End: Complemental strand, 33496682 - 33496519
Alignment:
Q  99 aggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtgg 198  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||| ||||    
T  33496682 aggataatgtttcatgtacacacttttttccatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagtttttttgtgtgtgg 33496583  T
Q  199 agggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
     |||| ||||| |||||||||||||||| | ||||||||||||||||||||||  |||||||||    
T  33496582 ggggatcacaaagacacttgtcaaaattatatgtgggtgtacaagtggtacatgtcacctaagg 33496519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 98 - 262
Target Start/End: Original strand, 46576240 - 46576404
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtg 197  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||        ||| |||    
T  46576240 aaggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtgactttttttgtgtgtg 46576339  T
Q  198 gagggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    | || ||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  46576340 ggggaaccacaaggacacttgttaaaattgtgtgtgggtgtacaagtggtacatgccacctaagg 46576404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 98 - 262
Target Start/End: Original strand, 30922708 - 30922872
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtg 197  Q
    ||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||       ||| |||    
T  30922708 aaggataatgtttcatgtacatacttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtgagtttttttgtgtgtg 30922807  T
Q  198 gagggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    | ||||| |||| |||||||||||||||| ||||||  |||||| ||||||||||||||||||||    
T  30922808 gggggactacaaggacacttgtcaaaattatgtgtgaatgtacatgtggtacataccacctaagg 30922872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 101 - 262
Target Start/End: Complemental strand, 52118 - 51958
Alignment:
Q  101 gataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtggag 200  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||| ||| |||||||||| |||||| ||||||||||||        || |||||     
T  52118 gataatgtttcatgtacacacttttttccatacacacattgtaccactacatatgagagtgtgagagagataatacatatgagttttttt-tgtgtggaa 52020  T
Q  201 ggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    ||||||||| || |||||| |||||||| | | | ||||||| | |||||||||||||||||    
T  52019 ggaccacaaggatacttgttaaaattgtatatagatgtacaaatagtacataccacctaagg 51958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 100 - 262
Target Start/End: Original strand, 38754897 - 38755057
Alignment:
Q  100 ggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtgga 199  Q
    ||||||| ||||||||||||  |||||| |||||| |||||||||||| ||||||||||||||||||||||||||| || ||||       ||| |||      
T  38754897 ggataatatttcatgtacacctttttttccatacatacattataccaccccatgtgagagtgtgtgagagacaataaatgtgagtttttttgtgtgtg-- 38754994  T
Q  200 gggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    |||| ||||  ||||| ||||| |||| ||| ||||||| |||||||||||| ||||||||||    
T  38754995 gggatcacatggacacatgtcataattatgtatgggtgttcaagtggtacatgccacctaagg 38755057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 104 - 262
Target Start/End: Complemental strand, 48460830 - 48460679
Alignment:
Q  104 aatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtggaggga 203  Q
    ||||||| |||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||    |||       ||  |||| ||||    
T  48460830 aatgttttatgtacacacttttttccacacacacattgtaccactccatgtgagagtgtgtgagagacaatac----gagttttattgt--gtgg-ggga 48460738  T
Q  204 ccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
     || || |||||||||||||||||| ||||| ||||||| |||||||| ||||||||||    
T  48460737 tcataaggacacttgtcaaaattgtatgtggatgtacaaatggtacatgccacctaagg 48460679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 38349457 - 38349532
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccac-tccatgtgagagtgtgtgagagaca 172  Q
    ||||||||||||||||| |||| ||||  |  ||||||||||| |||||| ||||||||||||||| |||||||||    
T  38349457 aaggataatgtttcatgaacaccctttcctctatacacacattgtaccacttccatgtgagagtgtttgagagaca 38349532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 47480012 - 47480090
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccactcc-atgtgagagtgtgtgagagacaata 175  Q
    ||||| ||| ||| ||||| ||||||| || |||||||||||| |||||| || |||||||||||||| ||||||||||    
T  47480012 aaggacaatctttaatgtatacactttcttccatacacacattgtaccacccccatgtgagagtgtgtaagagacaata 47480090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 262
Target Start/End: Complemental strand, 28713860 - 28713697
Alignment:
Q  99 aggataatgtttcatgtacacacttttttgcatacacacattataccac-tccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtg 197  Q
    |||||||||||||||| |||| ||||| |  ||||||| ||| |||||| | ||||||||||||| |||||||||  | | |||||        || |||    
T  28713860 aggataatgtttcatgaacacccttttctctatacacatattgtaccactttcatgtgagagtgtttgagagacacaaaagatgagtttctta-tgtgtg 28713762  T
Q  198 gagggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
     ||||| ||||  ||||| ||||| |||| | ||||||||||||||||||| || ||||||||||    
T  28713761 tagggaacacatggacacatgtcacaattatatgtgggtgtacaagtggtatatgccacctaagg 28713697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 31741114 - 31741063
Alignment:
Q  211 gacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    ||||| ||||| |||||||| |||||||| ||||||||||| ||||||||||    
T  31741114 gacacatgtcacaattgtgtatgggtgtataagtggtacatgccacctaagg 31741063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 42974490 - 42974540
Alignment:
Q  212 acacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    |||| ||||| |||||| |||||||||| ||||||||||| ||||||||||    
T  42974490 acacatgtcacaattgtatgtgggtgtataagtggtacatgccacctaagg 42974540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 31741217 - 31741148
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccact-ccatgtgagagtgtgtga 166  Q
    ||||||||||||||||| |||  |||||||  ||||||||  | ||||||| ||||||||||||||||||    
T  31741217 aaggataatgtttcatgaacatccttttttctatacacactatgtaccactcccatgtgagagtgtgtga 31741148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 99 - 262
Target Start/End: Original strand, 32599247 - 32599410
Alignment:
Q  99 aggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtgg 198  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||       ||| ||||    
T  32599247 aggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgacagacaatacatgtgagtttttttgtgtgtgg 32599346  T
Q  199 agggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    ||||||||||| |||||||||||||||| ||||||| |||||||||||||||| ||||||||||    
T  32599347 agggaccacaaggacacttgtcaaaattatgtgtggatgtacaagtggtacatgccacctaagg 32599410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 100 - 262
Target Start/End: Original strand, 13696965 - 13697127
Alignment:
Q  100 ggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtgga 199  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||        ||| ||||     
T  13696965 ggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtgactttttttgtgtgtggg 13697064  T
Q  200 gggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    || ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13697065 ggaaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaagg 13697127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 100 - 262
Target Start/End: Complemental strand, 17823761 - 17823599
Alignment:
Q  100 ggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtgga 199  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||       ||| ||||     
T  17823761 ggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtgagtttttttgtgtgtggg 17823662  T
Q  200 gggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    |||||||||| ||||||| |||||||||| |||||||||||||||| ||||||||| ||||||    
T  17823661 gggaccacaaggacacttatcaaaattgtatgtgggtgtacaagtgatacataccatctaagg 17823599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 100 - 262
Target Start/End: Original strand, 36272661 - 36272823
Alignment:
Q  100 ggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtgga 199  Q
    |||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||| ||||||||||| ||||       ||| |||      
T  36272661 ggataatgtttcatgtacacacttttttccatatacacattgtaccactccatgtgagagtgtgtgaaagacaatacatgtgagtttttttgtgtgtgtg 36272760  T
Q  200 gggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  36272761 gggaccacaaggacacttgtcaaaattgtgtgtgggtgtataagtggtacatgccacctaagg 36272823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 98 - 261
Target Start/End: Original strand, 36709190 - 36709352
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtg 197  Q
    ||||||||||||||||||||||| |||||| |||||| ||||| ||||||||||| ||||| ||||||| ||||||||||| ||||       ||| |||    
T  36709190 aaggataatgtttcatgtacacatttttttccatacaaacattgtaccactccatatgagaatgtgtgacagacaatacatgtgagtttttt-gtgtgtg 36709288  T
Q  198 gagggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaag 261  Q
    | ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  36709289 gggggaccacaatgacatttgtcaaaattgtgtgtgggtgtataagtggtacataccacctaag 36709352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 98 - 262
Target Start/End: Original strand, 33555360 - 33555525
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgag-nnnnnnngtgcgt 196  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||| ||||||||||| ||||         || ||    
T  33555360 aaggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagaatgtgtgacagacaatacatgtgagttttttttttgtgt 33555459  T
Q  197 ggagggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    || |||||||||||||||||||||||||||||||||  ||||||||||||||||| |||| |||||    
T  33555460 ggggggaccacaatgacacttgtcaaaattgtgtgtaagtgtacaagtggtacatgccacttaagg 33555525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 98 - 251
Target Start/End: Complemental strand, 40095446 - 40095294
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtg 197  Q
    ||||||||||||||||||||||| |||||| |||||| ||| | |||||||| ||| |||||||||||||||||||||||| | ||       ||| |||    
T  40095446 aaggataatgtttcatgtacaca-ttttttccatacatacactgtaccactctatgcgagagtgtgtgagagacaatacatgtaagtttttttgtgtgtg 40095348  T
Q  198 gagggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacat 251  Q
    | ||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  40095347 gggggaccacaatgacacttgtcaaaattgtatgtggatgtacaagtggtacat 40095294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 99 - 261
Target Start/End: Original strand, 14242523 - 14242676
Alignment:
Q  99 aggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtgg 198  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||| |||||||| ||||       ||| ||||    
T  14242523 aggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtctgagaggcaatacatgtgagcttttttgtgtgtgg 14242622  T
Q  199 agggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaag 261  Q
     |         | |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14242623 gg---------taacacttgtcaaaattgtgtgtgggtgtacaggtggtacataccacctaag 14242676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 100 - 257
Target Start/End: Original strand, 42061237 - 42061388
Alignment:
Q  100 ggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagaga--caatacatatgagnnnnnnn-gtgcgt 196  Q
    |||||||||||||||||||||||||||| |||||||         |||||||| |||||||||||||||||  |||||||| ||||        ||| ||    
T  42061237 ggataatgtttcatgtacacacttttttccatacac---------cactccatatgagagtgtgtgagagagacaatacatgtgagttttttgtgtgtgt 42061327  T
Q  197 ggagggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacc 257  Q
    || |||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||    
T  42061328 ggggggaccacaaggacacttgtcaaaattgtatgtgggtgtacaagtggtacatgccacc 42061388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 4434592 - 4434667
Alignment:
Q  100 ggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaata 175  Q
    ||||||||||||||| ||||  |||||| |||||||||||| ||||||  ||||||||| ||||||||||||||||    
T  4434592 ggataatgtttcatgaacactattttttccatacacacattgtaccacctcatgtgagaatgtgtgagagacaata 4434667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 100 - 166
Target Start/End: Complemental strand, 3121782 - 3121715
Alignment:
Q  100 ggataatgtttcatgtacacacttttttgcatacacacattataccact-ccatgtgagagtgtgtga 166  Q
    ||||||||||||||| |||| ||||| |||||||||||  | ||||||| ||||||||||||||||||    
T  3121782 ggataatgtttcatgaacacccttttctgcatacacactatgtaccactcccatgtgagagtgtgtga 3121715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 23860259 - 23860326
Alignment:
Q  195 gtggagggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    |||| |||| |||||  |||||||||||||| ||||||| || |||||||||||||| ||||||||||    
T  23860259 gtggggggatcacaagaacacttgtcaaaatagtgtgtgagtatacaagtggtacatgccacctaagg 23860326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 99 - 262
Target Start/End: Complemental strand, 40216592 - 40216429
Alignment:
Q  99 aggataatgtttcatgtacacacttttttgcatacacacattataccac-tccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtg 197  Q
    |||||||||||||||| |||| ||||  |  ||||||||||| |||||| ||||||||||||||| |||||||||  | | |||||        || |||    
T  40216592 aggataatgtttcatgaacaccctttcctctatacacacattgtaccacttccatgtgagagtgtttgagagacataaaagatgagtttctta-tgtgtg 40216494  T
Q  198 gagggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
     ||||||||||  ||||| ||||| |||| | ||||||||||||||||||| ||| || ||||||    
T  40216493 tagggaccacatggacacatgtcacaattatatgtgggtgtacaagtggtatatatcatctaagg 40216429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 138
Target Start/End: Original strand, 23860198 - 23860236
Alignment:
Q  100 ggataatgtttcatgtacacacttttttgcatacacaca 138  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  23860198 ggataatgtttcatgtacacacttttttccatacacaca 23860236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 225 - 262
Target Start/End: Original strand, 14945861 - 14945898
Alignment:
Q  225 ttgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  14945861 ttgtgtgtgggtgtacaagtggtacatgccacctaagg 14945898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 24475812 - 24475863
Alignment:
Q  211 gacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    ||||| ||||| |||||||| |||||||| ||||| ||||||||||||||||    
T  24475812 gacacatgtcacaattgtgtatgggtgtataagtgatacataccacctaagg 24475863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 8e-53; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 100 - 262
Target Start/End: Original strand, 34792651 - 34792813
Alignment:
Q  100 ggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtgga 199  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||       ||| || ||    
T  34792651 ggataatgtttcatgtacacacttttttgcatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtgagtttttgtgtgtgtaga 34792750  T
Q  200 gggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    | |||||||| |||||||||||||||| | |||||||||||||||||||||| ||||||||||    
T  34792751 gagaccacaaggacacttgtcaaaattatatgtgggtgtacaagtggtacatgccacctaagg 34792813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 99 - 262
Target Start/End: Complemental strand, 9046015 - 9045853
Alignment:
Q  99 aggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtgg 198  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| | ||       ||| ||||    
T  9046015 aggataatgtttcatgtacacactttttttcatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtaagtttttgtgtgtgtgg 9045916  T
Q  199 agggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    | |||||||||  |||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  9045915 a-ggaccacaagaacacttgtcaaaattgtgtgtgggtgtacaagtgatacatgccacctaagg 9045853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 98 - 262
Target Start/End: Original strand, 14313985 - 14314148
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtg 197  Q
    |||||||||||||||||||||||||||||  |||||||||||| |||||||  |||||||||||||||||||||||||||| |||        ||| |||    
T  14313985 aaggataatgtttcatgtacacactttttc-catacacacattgtaccactttatgtgagagtgtgtgagagacaatacatgtgactttttttgtgtgtg 14314083  T
Q  198 gagggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    | || ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14314084 ggggaaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaagg 14314148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 97 - 262
Target Start/End: Original strand, 1244553 - 1244718
Alignment:
Q  97 caaggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgt 196  Q
    |||||||||||||||||||||||| |||||| |||||||||||| ||| ||| ||| |||||||||  |||||||||||||| ||||       ||| ||    
T  1244553 caaggataatgtttcatgtacacattttttttcatacacacattgtactacttcatatgagagtgttcgagagacaatacatgtgagtttttttgtgtgt 1244652  T
Q  197 ggagggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    || |||||||||| |||||||| ||||||||||||||| |||||||||||||||| |||| |||||    
T  1244653 ggggggaccacaaggacacttgccaaaattgtgtgtggatgtacaagtggtacatgccacttaagg 1244718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 9521810 - 9521895
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgag 183  Q
    |||||||||||||||||||||  ||||| | |||||||||||| |||||  |||||| | |||||||  ||||||||| |||||||    
T  9521810 aaggataatgtttcatgtacatccttttctccatacacacattgtaccatcccatgtaaaagtgtgtaggagacaataaatatgag 9521895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 23916146 - 23916077
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccact-ccatgtgagagtgtgtga 166  Q
    ||||||||||||||||| |||| ||||| |||||||||||  | ||||||| ||||||||||||||||||    
T  23916146 aaggataatgtttcatgaacacccttttctgcatacacactatgtaccactcccatgtgagagtgtgtga 23916077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 12748396 - 12748321
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccac-tccatgtgagagtgtgtgagagaca 172  Q
    ||||||||||||||||  |||| ||||| |  ||||||||||| |||||| ||||||||||||||| |||||||||    
T  12748396 aaggataatgtttcataaacacccttttctttatacacacattgtaccacttccatgtgagagtgtttgagagaca 12748321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 29429655 - 29429604
Alignment:
Q  211 gacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    ||||| ||||| |||||| |||||||||||||||||||||| ||||||||||    
T  29429655 gacacatgtcacaattgtatgtgggtgtacaagtggtacatgccacctaagg 29429604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 16718179 - 16718106
Alignment:
Q  100 ggataatgtttcatgtacacacttttttgcatacacacattataccac-tccatgtgagagtgtgtgagagaca 172  Q
    ||||||||||||||| |||| ||||| |  ||||||||||| |||||| ||||||||| ||||| |||||||||    
T  16718179 ggataatgtttcatgaacacccttttctctatacacacattgtaccacttccatgtgatagtgtttgagagaca 16718106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 262
Target Start/End: Original strand, 9521943 - 9521979
Alignment:
Q  226 tgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    |||||||||||||||||||||||||| ||||||||||    
T  9521943 tgtgtgtgggtgtacaagtggtacatgccacctaagg 9521979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 262
Target Start/End: Complemental strand, 23916054 - 23915992
Alignment:
Q  200 gggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    |||||||||  ||||| ||||| |||||||| |||||||| ||||||||||| ||| ||||||    
T  23916054 gggaccacatggacacatgtcacaattgtgtatgggtgtataagtggtacatgccatctaagg 23915992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 32720541 - 32720468
Alignment:
Q  100 ggataatgtttcatgtacacacttttttgcatacacacattataccactcc-atgtgagagtgtgtgagagaca 172  Q
    |||||||| || ||| ||||  |||||| |||||||||||||||||||||| || ||| ||| |||||||||||    
T  32720541 ggataatgctttatggacacctttttttccatacacacattataccactcctatttgaaagtatgtgagagaca 32720468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 98 - 262
Target Start/End: Original strand, 43065903 - 43066066
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtg 197  Q
    ||||||||||||| ||||||||| |||||| |||||| ||||| ||||| ||||||||||||||||||||||||||||||| ||||       ||| |||    
T  43065903 aaggataatgttttatgtacacatttttttccatacatacattgtaccattccatgtgagagtgtgtgagagacaatacatgtgagtttttttgtgtgtg 43066002  T
Q  198 gagggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    | |||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  43066003 g-gggaccacaaggacacttgtcaaaattgtgtgtggatgtacaagtggtacatgccacctaagg 43066066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 99 - 262
Target Start/End: Original strand, 14342186 - 14342351
Alignment:
Q  99 aggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatg-agnnnnnnngtgcgtg 197  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| || |        |||  ||    
T  14342186 aggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtgaattttttttgtgtatg 14342285  T
Q  198 gagggaccacaatgacacttgtc-aaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    | |||||||||| |||||||||| ||||||||||||||||||| ||||||||||| ||||||||||    
T  14342286 gggggaccacaaggacacttgtcaaaaattgtgtgtgggtgtataagtggtacatgccacctaagg 14342351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 99 - 262
Target Start/End: Original strand, 1993638 - 1993802
Alignment:
Q  99 aggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgag-nnnnnnngtgcgtg 197  Q
    ||||||||||||| ||||||||||||||| |||||||||||| ||||| | ||||||||||||| ||||||||||||||| ||||         || |||    
T  1993638 aggataatgtttcgtgtacacactttttttcatacacacattgtaccatttcatgtgagagtgtatgagagacaatacatgtgagttttttttatgtgtg 1993737  T
Q  198 gagggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    | | |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  1993738 gggagaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtgatacatgccacctaagg 1993802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 4076767 - 4076852
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgag 183  Q
    |||||||||||||||||||||||||||||| |||||||| ||| |||||||| |||||||||||||||||||||||||||| ||||    
T  4076767 aaggataatgtttcatgtacacacttttttccatacacatattgtaccactctatgtgagagtgtgtgagagacaatacatgtgag 4076852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 5749029 - 5749104
Alignment:
Q  100 ggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaata 175  Q
    ||||||| |||||||||||   |||||| |||||| |||||||||||| |||||||||||||||||||||||||||    
T  5749029 ggataatatttcatgtacatcttttttttcatacatacattataccaccccatgtgagagtgtgtgagagacaata 5749104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 100 - 262
Target Start/End: Complemental strand, 11905035 - 11904873
Alignment:
Q  100 ggataatgtttcatgtacacacttttttgcatacacacattataccac-tccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtgg 198  Q
    ||||||||||||||| |||| ||||| |  ||||||||||| |||||| ||||||||||||||| |||||||||  | | |||||       ||| | |     
T  11905035 ggataatgtttcatgaacacccttttctctatacacacattgtaccacttccatgtgagagtgtttgagagacacaaaagatgag-tttcttgtgtgagt 11904937  T
Q  199 agggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    ||||||||||  ||||| ||||| |||| | ||||||||||||||||||| || ||||||||||    
T  11904936 agggaccacatggacacatgtcacaattatatgtgggtgtacaagtggtatatgccacctaagg 11904873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 8368482 - 8368533
Alignment:
Q  211 gacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||    
T  8368482 gacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccacctaagg 8368533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 200 - 262
Target Start/End: Original strand, 4077061 - 4077123
Alignment:
Q  200 gggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    ||||||||||  |||||| ||||| |||||||||||| |||||||||||||| ||||||||||    
T  4077061 gggaccacaagaacacttatcaaagttgtgtgtgggtatacaagtggtacatgccacctaagg 4077123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 35200740 - 35200665
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccac-tccatgtgagagtgtgtgagagaca 172  Q
    ||||||||||||| ||| |||| ||||| |  ||||||||||| |||||| ||||||||||||||| |||||||||    
T  35200740 aaggataatgtttgatgaacacccttttctctatacacacattgtaccacttccatgtgagagtgtttgagagaca 35200665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 2599601 - 2599551
Alignment:
Q  212 acacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    |||| ||||| |||||||| |||||||| ||||||||||| ||||||||||    
T  2599601 acacatgtcacaattgtgtatgggtgtataagtggtacatgccacctaagg 2599551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 41075709 - 41075759
Alignment:
Q  212 acacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
    |||| ||||| |||||| ||||||||||||||||||||||  |||||||||    
T  41075709 acacatgtcacaattgtatgtgggtgtacaagtggtacatgtcacctaagg 41075759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 98 - 251
Target Start/End: Original strand, 3054 - 3204
Alignment:
Q  98 aaggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtg 197  Q
    |||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||        |||        
T  3054 aaggataatgtttcatatacacacttttttccatacacacattgtaccactccatgtgagagtgtatgagagacaatacatatgaatttttttgtg---t 3150  T
Q  198 gagggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacat 251  Q
    ||||||| |||| |||||||||||||||||| ||||||||||||| ||||||||    
T  3151 gagggactacaaggacacttgtcaaaattgtatgtgggtgtacaaatggtacat 3204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0533 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 100 - 262
Target Start/End: Original strand, 10232 - 10393
Alignment:
Q  100 ggataatgtttcatgtacacacttttttgcatacacacattataccactccatgtgagagtgtgtgagagacaatacatatgagnnnnnnngtgcgtgga 199  Q
    |||||||||||||||||| ||||||||  |||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||       ||| |||      
T  10232 ggataatgtttcatgtacgcactttttc-catacacacattgtaccactccatgtgagagtatgtgagagacaatacatgtgagtttttttgtgtgtgag 10330  T
Q  200 gggaccacaatgacacttgtcaaaattgtgtgtgggtgtacaagtggtacataccacctaagg 262  Q
     ||||||||| |||||||||||||||| | ||||  | ||||||| ||||||  |||||||||    
T  10331 aggaccacaaggacacttgtcaaaattatatgtgaatatacaagtagtacatgtcacctaagg 10393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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