View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19050_low_13 (Length: 464)
Name: NF19050_low_13
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19050_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 209 - 459
Target Start/End: Original strand, 3489466 - 3489716
Alignment:
| Q |
209 |
ggcatgttcttattgcatttattgtttcacgtgtatcatttgaattcaaatttgaatttgtttaaattaatgtacatgaatcagatgagaaaccaagtaa |
308 |
Q |
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| T |
3489466 |
ggcatgttcttattgcatttattgtttcacgtgtatcatttgaattcaaattcgaatttgtttaaattaatgtacatgaatcagatgagaaaccaagtaa |
3489565 |
T |
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| Q |
309 |
ttctgatgttgaatttcttatacattaaattctgtacattatttccatttattgataattaagccaatttttaaattagagatcataaaataaaaaattt |
408 |
Q |
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| T |
3489566 |
ttctgatgttgaatttcttatacattaaattctgtacattatttccatttattgataattaagccaatttttaaattagagatcataaaatcaaaaattt |
3489665 |
T |
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| Q |
409 |
tgttttacaacttatatgaagagtgcttaataaattttcatttcatatcac |
459 |
Q |
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| T |
3489666 |
tgttttacaacttatatgaagagtgtttaataaattttcatttcatatcac |
3489716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 3489277 - 3489405
Alignment:
| Q |
18 |
atcttagagatgctcaattgaaacacctatacatgcagaaaatttgtttattagaagtgagaatgttgttcagtgaaatatatttttgattttgggtggc |
117 |
Q |
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| T |
3489277 |
atcttagagatgctcaattgaaacacctatacatgcagaaaatttgtttattagaagtgagaatgttgctcagtgaaatatatttttgattttgggtggc |
3489376 |
T |
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| Q |
118 |
tgaaattaaagaatgaaggagcctcttag |
146 |
Q |
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| T |
3489377 |
tgaaattaaagaatgaaggagcctcttag |
3489405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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