View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19050_low_16 (Length: 450)
Name: NF19050_low_16
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19050_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 26 - 447
Target Start/End: Complemental strand, 26562944 - 26562516
Alignment:
| Q |
26 |
ttatccctccctcttcattcttgttctttttaaccatcaaaggaatgaagtgcctcaacacattgacattacctttcaagttggtatccatcaccaaatc |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26562944 |
ttatccctccctcttcattcttgttctttttaaccatcaaagaaatgaagtgcctcaacacattgacattacctttcaagttggtatccatcaccaaatc |
26562845 |
T |
|
| Q |
126 |
aaactcttcagacaaaacctcccacatcttgttgttcttgttaatgactccagcgtcgttcactataatatctggaggacctccatttttctccataaca |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26562844 |
aaactcttcagacaaaacctcccacatcttgttgttcttgttaatgactccagcgtcgttcactataatatttggaggacctccatttttctccataaca |
26562745 |
T |
|
| Q |
226 |
atgcacgccatctc--------ttcaaccctgctattgaacttaaaatcaatattgaggaatagatgatgttgttgttgggaagttgagattgaaggaag |
317 |
Q |
| |
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|||||||||||||| |||||||||| | |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
26562744 |
atgcacgccatctcttcatctcttcaaccctgttcttgaacttaaaatcaatattgaggaataaat-atgttgttgttgggaagttgagattgaaggaag |
26562646 |
T |
|
| Q |
318 |
tcgagcttatcttgatcacgtgaacatccaataatggtgtggtcgtgataagccaattcaatcgcaagagcccttccaaggcctttgctaacaccagtta |
417 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
26562645 |
tcgagcttatcttgatcacctgaacatccaataatggtgtggtcgtgataagccaattcaattgcaagagcccttccgaggcctttgctaacaccagtta |
26562546 |
T |
|
| Q |
418 |
tcatcactgttcgatttcctttgcttctcc |
447 |
Q |
| |
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||||||||||||||||||||||||| |||| |
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| T |
26562545 |
tcatcactgttcgatttcctttgctcctcc |
26562516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 19 - 438
Target Start/End: Original strand, 26560663 - 26561086
Alignment:
| Q |
19 |
ttcactattatccctccctcttcattcttgttctttttaaccatcaaaggaatgaagtgcctcaacacattgacattacctttcaagttggtatccatca |
118 |
Q |
| |
|
||||||||||||||||||||||||| ||| || ||||||||||||||||| |||||| |||||||||||||| || ||||||||||||||||||||||| |
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| T |
26560663 |
ttcactattatccctccctcttcatactttttatttttaaccatcaaaggtatgaagggcctcaacacattggcagcacctttcaagttggtatccatca |
26560762 |
T |
|
| Q |
119 |
ccaaatcaaactcttcagacaaaacctcccacatcttgttgttcttgttaatgactccagcgtcgttcactataatatctggaggacctccatttttctc |
218 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||| |||||||||||||||||| |
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| T |
26560763 |
ccaaatcaaactcttcagacggaacctcccacatcttgttgttcttgttaacgactccggcgccgttcactataatatctgaaggacctccatttttctc |
26560862 |
T |
|
| Q |
219 |
cataacaatgcacgccatctcttcaaccctgctattgaacttaaaatcaatattgaggaatagatgat-gttgttgttgggaagttgagattgaaggaag |
317 |
Q |
| |
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||||| ||||||||||||||||||||| ||| ||||| || ||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
26560863 |
cataaaaatgcacgccatctcttcaactctgttattgcacctaacatcaatattgaggaatagatgatggttgttattgggaagttgagattgaaggaag |
26560962 |
T |
|
| Q |
318 |
tcgagcttatcttgatcacgtgaacatccaataatggtgtggtcgtgataagcc---aattcaatcgcaagagcccttccaaggcctttgctaacaccag |
414 |
Q |
| |
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||||| ||||| ||||||| |||||||||||||||||||||| | |||||||| ||||||||| ||||| ||||||| |||||||||||||| || |
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| T |
26560963 |
tcgagtttatcctgatcacatgaacatccaataatggtgtggctgcgataagccaataattcaatcacaagaacccttccgaggcctttgctaacgttag |
26561062 |
T |
|
| Q |
415 |
ttatcatcactgttcgatttcctt |
438 |
Q |
| |
|
|| | |||||| |||||||||||| |
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|
| T |
26561063 |
ttttaatcactattcgatttcctt |
26561086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 436
Target Start/End: Original strand, 24890122 - 24890543
Alignment:
| Q |
19 |
ttcactattatccctccctcttcattcttgttctttttaaccatcaaaggaatgaagtgcctcaacacattgacattacctttcaagttggtatccatca |
118 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| | ||| | ||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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|
| T |
24890122 |
ttcactattatccctcccatttcattcttgttcttggcgatcattagaggaatgaagtgcctcaacacattggcagtacctttcaagttggtatccatca |
24890221 |
T |
|
| Q |
119 |
ccaaatcaaactcttcagacaaaacctcccacatcttgttgttcttgttaatgactccagcgtcgttcactataatatctggaggacctccatttttctc |
218 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
24890222 |
ccgaatcaaactcttcagagggaacctcccacatcttactgttcttgttaatgacgccagcgccgttcactataatatctggaggacctccttttttctc |
24890321 |
T |
|
| Q |
219 |
cataacaatgcacgccatctcttcaaccctgctattgaacttaaaatcaatattgaggaatagatgatg-ttgttgttgggaagttgagattgaaggaag |
317 |
Q |
| |
|
|||||||||| |||||||||||||| || |||| || ||| ||||| ||| |||||||||||| ||| || ||||||||||||||||||||||| |
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| T |
24890322 |
cataacaatgtgtgccatctcttcaacgttgtaattgcacctaacatcaacgctgatgaatagatgatgattggtgctgggaagttgagattgaaggaag |
24890421 |
T |
|
| Q |
318 |
tcgagctta---tcttgatcacgtgaacatccaataatggtgtggtcgtgataagccaattcaatcgcaagagcccttccaaggcctttgctaacaccag |
414 |
Q |
| |
|
||||||||| || |||||||| |||||||| |||||||||||| || ||| |||||||||||| |||||||||||||| ||||| ||||||||||||| |
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| T |
24890422 |
tcgagcttattgtcatgatcacgagaacatccgataatggtgtggccgcgattagccaattcaattgcaagagcccttccgaggcccttgctaacaccag |
24890521 |
T |
|
| Q |
415 |
ttatcatcactgttcgatttcc |
436 |
Q |
| |
|
|||||||||||||| ||||||| |
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|
| T |
24890522 |
ttatcatcactgtttgatttcc |
24890543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 70 - 420
Target Start/End: Complemental strand, 56436896 - 56436542
Alignment:
| Q |
70 |
atgaagtgcctcaacacattgacattacctttcaagttggtatccatcaccaaatcaaactcttcagacaaaacctcccacatcttgttgttcttgttaa |
169 |
Q |
| |
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||||| || |||||||||||| || | ||||||||||| ||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||| | |
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| T |
56436896 |
atgaaatgtctcaacacattggcagttcctttcaagtttgtatccatcaccaaatcaaactcttgagaaggaacttcccacatcttgttgttcttgttga |
56436797 |
T |
|
| Q |
170 |
tgactccagcgtcgttcactataatatctggaggacctccatttttctccataacaatgcacgccatctcttcaaccctgctattgaacttaaaatcaat |
269 |
Q |
| |
|
| || ||| |||||| |||| ||| || ||||| || || ||||||||||| ||| ||||||| || ||| ||| |||| | | | |||| |
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|
| T |
56436796 |
tagtacctgcgctgttcacaataacatcaggtggaccccccttcatctccataacagtgcgagccatctgttgaacgctgtcattggagctgacgtcaac |
56436697 |
T |
|
| Q |
270 |
attgaggaatagatgatgttg-ttgttgggaagt---tgagattgaaggaagtcgagcttatcttgatcacgtgaacatccaataatggtgtggtcgtga |
365 |
Q |
| |
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||||||||| ||||||| || || || |||||| |||||||||| | || |||||||| ||| |||| ||||| || ||||||||||| | || |
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| T |
56436696 |
attgaggaagagatgattatgattatttggaagtaaaagagattgaagagaatcaagcttatcctgagcacgagaacaacctataatggtgtgacctcga |
56436597 |
T |
|
| Q |
366 |
taagccaattcaatcgcaagagcccttccaaggcctttgctaacaccagttatca |
420 |
Q |
| |
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| ||||||||||| ||||||||||| |||| ||||||||||||||||| |||| |
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|
| T |
56436596 |
ttcgccaattcaatagcaagagccctaccaattcctttgctaacaccagtaatca |
56436542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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