View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19050_low_2 (Length: 857)

Name: NF19050_low_2
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19050_low_2
NF19050_low_2
[»] chr2 (10 HSPs)
chr2 (49-840)||(33413661-33414453)
chr2 (535-840)||(28027943-28028224)
chr2 (722-840)||(13109069-13109186)
chr2 (358-467)||(13549868-13549977)
chr2 (425-474)||(43627236-43627285)
chr2 (425-467)||(45421262-45421304)
chr2 (619-695)||(4659641-4659716)
chr2 (616-691)||(5188291-5188366)
chr2 (425-475)||(9949618-9949668)
chr2 (437-474)||(33547609-33547646)
[»] chr8 (7 HSPs)
chr8 (535-840)||(43041180-43041480)
chr8 (596-840)||(43039349-43039588)
chr8 (535-840)||(14196671-14196977)
chr8 (214-277)||(40439745-40439808)
chr8 (425-475)||(2871926-2871976)
chr8 (425-475)||(7452088-7452138)
chr8 (535-567)||(43039325-43039357)
[»] chr7 (8 HSPs)
chr7 (535-840)||(37747679-37747987)
chr7 (535-840)||(37749244-37749543)
chr7 (569-663)||(45809774-45809872)
chr7 (604-671)||(33829589-33829656)
chr7 (425-467)||(15654059-15654101)
chr7 (437-474)||(13439790-13439827)
chr7 (425-474)||(28327093-28327142)
chr7 (425-474)||(30385937-30385986)
[»] chr6 (7 HSPs)
chr6 (275-534)||(14528050-14528309)
chr6 (275-532)||(14532778-14533035)
chr6 (535-660)||(31798781-31798913)
chr6 (378-467)||(4406756-4406845)
chr6 (719-804)||(34391113-34391199)
chr6 (719-803)||(34486361-34486445)
chr6 (425-467)||(1682790-1682832)
[»] chr1 (12 HSPs)
chr1 (535-840)||(38206827-38207132)
chr1 (614-840)||(3585452-3585671)
chr1 (569-673)||(929847-929951)
chr1 (535-616)||(31477944-31478025)
chr1 (569-663)||(7493580-7493674)
chr1 (535-605)||(3584475-3584545)
chr1 (429-475)||(47116024-47116070)
chr1 (425-467)||(36305528-36305570)
chr1 (225-282)||(12967297-12967354)
chr1 (437-474)||(32353663-32353700)
chr1 (425-474)||(38231424-38231473)
chr1 (437-474)||(48073798-48073835)
[»] chr4 (10 HSPs)
chr4 (535-798)||(53611218-53611450)
chr4 (425-475)||(3130333-3130383)
chr4 (621-695)||(29298553-29298626)
chr4 (425-467)||(7663592-7663634)
chr4 (130-161)||(51203233-51203264)
chr4 (214-264)||(31063631-31063681)
chr4 (425-467)||(47540669-47540711)
chr4 (425-474)||(20673446-20673495)
chr4 (437-474)||(23873842-23873879)
chr4 (437-474)||(55298360-55298397)
[»] chr5 (5 HSPs)
chr5 (366-475)||(31862329-31862438)
chr5 (569-605)||(6600746-6600782)
chr5 (425-465)||(10487260-10487300)
chr5 (425-475)||(34480692-34480742)
chr5 (437-474)||(34858059-34858096)
[»] chr3 (8 HSPs)
chr3 (600-692)||(4809991-4810081)
chr3 (425-474)||(7146778-7146827)
chr3 (425-467)||(30167699-30167741)
chr3 (358-474)||(2813787-2813903)
chr3 (735-804)||(496582-496648)
chr3 (425-466)||(9378842-9378883)
chr3 (437-474)||(23601510-23601547)
chr3 (795-840)||(54017245-54017290)
[»] scaffold0330 (1 HSPs)
scaffold0330 (733-800)||(17063-17130)
[»] scaffold0240 (1 HSPs)
scaffold0240 (733-800)||(1081-1148)
[»] scaffold0418 (1 HSPs)
scaffold0418 (425-467)||(7419-7461)


Alignment Details
Target: chr2 (Bit Score: 570; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 49 - 840
Target Start/End: Complemental strand, 33414453 - 33413661
Alignment:
Q  49 ctattatgaattcacagtacaataaactacttcattccttataaatataatgtatttgaaactgaaggttataaattatgattttcgtccctataaatat 148  Q
    |||||||||||||| || || |||||||||||||||| |||||||||||  | ||||||||||||||||| ||||||||||| |||||||||||||||||    
T  33414453 ctattatgaattcataggacgataaactacttcattcgttataaatatagcgaatttgaaactgaaggttttaaattatgatattcgtccctataaatat 33414354  T
Q  149 tgcgaattttgatctatatttatagcgaattttttcatctctatattttaaaatatatttaattcttctgttaatctatgttttctataccattagtgaa 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||    
T  33414353 tgcgaattttgatctatatttatagcgaattttttcatctctatattttaacatatatttaactcttcttttaatctatgttttctataccattagtgaa 33414254  T
Q  249 agatattattgtaaaacaaatcacaattattattatcgtgcactacctttgctactctatggtcgttagtgcgggactggattggcttttcggcggtgga 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  33414253 agatattattgtaaaacaaatcacaattattattatcgtgcactacctttgctactctatggtcgttagtgcgggactagattggtttttcggcggtgga 33414154  T
Q  349 ctcccaaattatttccaatcatttcttgcagtttacacatttgacaagtagtgggaaagctcaacgctcgtttctacaacttatatgacttctttgtgcc 448  Q
    |||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| |     
T  33414153 ctcccagattatttccgatcatttcttgtagttttcacatttgacaagtagtgggaaagctcagcgctcgtttctacaacttatatggcttatttgtaca 33414054  T
Q  449 tgggttgtgtggaatgaacataataatatattattcaataattttgaaacccaaattccccgattgttggataaagttaaatatttttgaagtataattc 548  Q
    ||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  33414053 tggattgtgtggaatgaacataataatatcttattcaataattctgaaacccaaattccccggttgttggataaagttaaatattgttgaagtataattc 33413954  T
Q  549 atattctaatgttagttagctgtggataaatccaactatatttgttg--------gttagttagtaactaactagttagttagtttgttagtggcttgta 640  Q
    |||||||||  |||||||| | ||||||||||||||||| |||||||        ||||||||||||||||||||||||| |||| ||||||||||||||    
T  33413953 atattctaa--ttagttagttatggataaatccaactatgtttgttggttaattagttagttagtaactaactagttagtcagttagttagtggcttgta 33413856  T
Q  641 gtgcaagttactcaacttagcctataagtacttagc-tttgtattcagttgatatagattgtatttgtatagcagacatctcatatctttcatattcaat 739  Q
    |||||||||| |||||||| |||||||||||||||| ||||||||||||||||| |||      |||||||||| ||||||||||||| |||||||||||    
T  33413855 gtgcaagttattcaacttaacctataagtacttagcttttgtattcagttgatacaga------ttgtatagcacacatctcatatctctcatattcaat 33413762  T
Q  740 aatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttctctaaattatgtatgtgcatgttctat 839  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33413761 aatagaagaattttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttctctcaattatgtatgtgcatgttctat 33413662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 535 - 840
Target Start/End: Original strand, 28027943 - 28028224
Alignment:
Q  535 ttgaagtataattcatattctaatgttagttagctgtggataaatccaactatatttgttggttagttagtaactaactagttagttagtttgttagtgg 634  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||                   |||||||||||||    
T  28027943 ttgaagtataattcatattctaatgttagttagttgtggataaatccaactatgcttgttggttagtt-------------------agtttgttagtgg 28028023  T
Q  635 cttgtagtgcaagttactcaacttagcctataagtacttagcttt-gtattcagttgatatagattgtatttgtatagcagacatctcatatctttcata 733  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||      |||| ||||||||||||| |||||    
T  28028024 cttgtagtgcaagttactcaacttagcctataagtacttagcttttgtattcagttgatatagattgtat------agcacacatctcatatctctcata 28028117  T
Q  734 ttcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttctctaaattatgtatgtgcatg 833  Q
    ||||||||||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||||| | ||||||| |||||||||||||||||    
T  28028118 ttcaataatagaagagttttatcattcttttgtagtttcctctttaagtgtgagtgtgtagagatcattctaatatttctctcaattatgtatgtgcatg 28028217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 722 - 840
Target Start/End: Complemental strand, 13109186 - 13109069
Alignment:
Q  722 atatctttcatattcaataatagaagagttttatcattcctttgtagtttcctctc-atagtgtgagtgtgtagagatcattctattctttctctaaatt 820  Q
    |||||| ||||||||||||||| ||||| |||||||||| |||||||||| ||||| | ||||||||| ||| |||||||||||   |||||||| ||||    
T  13109186 atatctctcatattcaataata-aagagatttatcattcatttgtagttttctctctaaagtgtgagtatgt-gagatcattcttaactttctctcaatt 13109089  T
Q  821 atgtatgtgcatgttctatc 840  Q
     | |||||||||||||||||    
T  13109088 ctatatgtgcatgttctatc 13109069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 358 - 467
Target Start/End: Complemental strand, 13549977 - 13549868
Alignment:
Q  358 tatttccaatcatttcttgcagtttacacatttgacaagtagtgggaaagctcaacgctcgtttctacaacttatatgacttctttgtgcctgggttgtg 457  Q
    ||||||| ||||||| || |||||||| ||||||||| || ||||    |||  ||| || ||| | |||||||| || |||||||||||||||||||||    
T  13549977 tatttccgatcattttttacagtttactcatttgacaggtggtggtgttgctagacgttcttttatgcaacttatttggcttctttgtgcctgggttgtg 13549878  T
Q  458 tggaatgaac 467  Q
    ||||||||||    
T  13549877 tggaatgaac 13549868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 425 - 474
Target Start/End: Complemental strand, 43627285 - 43627236
Alignment:
Q  425 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataa 474  Q
    ||||||||||| |||||||||||||||||||| |||||||||| ||||||    
T  43627285 caacttatatggcttctttgtgcctgggttgtttggaatgaacgtaataa 43627236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 425 - 467
Target Start/End: Complemental strand, 45421304 - 45421262
Alignment:
Q  425 caacttatatgacttctttgtgcctgggttgtgtggaatgaac 467  Q
    ||||||||||| ||||||||||| |||||||||||||||||||    
T  45421304 caacttatatggcttctttgtgcatgggttgtgtggaatgaac 45421262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 619 - 695
Target Start/End: Original strand, 4659641 - 4659716
Alignment:
Q  619 gttagtttgttagtggcttgtagtgcaagttactcaacttagcctataagtacttagctttgtattcagttgatata 695  Q
    ||||||| ||||||| | |||||||||||| |||| ||||||||||||| ||||| | |||||||||| | ||||||    
T  4659641 gttagttagttagtgacctgtagtgcaagtaactctacttagcctataaatactt-gttttgtattcaatagatata 4659716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 691
Target Start/End: Original strand, 5188291 - 5188366
Alignment:
Q  616 ttagttagtttgttagtggcttgtagtgcaagttactcaacttagcctataagtacttagctttgtattcagttga 691  Q
    |||||||||| ||| ||| |||||||||||||||||   ||||||||||||| || |||| |||||| ||| ||||    
T  5188291 ttagttagttagtttgtgacttgtagtgcaagttacaacacttagcctataaataattagttttgtaatcaattga 5188366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 425 - 475
Target Start/End: Original strand, 9949618 - 9949668
Alignment:
Q  425 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataat 475  Q
    ||||||||||| ||||| |||| ||||||||| |||||||||| |||||||    
T  9949618 caacttatatggcttctatgtgtctgggttgtttggaatgaacgtaataat 9949668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 474
Target Start/End: Complemental strand, 33547646 - 33547609
Alignment:
Q  437 cttctttgtgcctgggttgtgtggaatgaacataataa 474  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  33547646 cttctttgtgcctgggttgtttggaatgaacgtaataa 33547609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 220; Significance: 1e-120; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 535 - 840
Target Start/End: Original strand, 43041180 - 43041480
Alignment:
Q  535 ttgaagtataattcatattctaatgttagttagctgtggataaatccaactatatttgttggttagttagtaactaactagttagttagtttgttagtgg 634  Q
    ||||||||||||||||||||||||||||||||| | |||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  43041180 ttgaagtataattcatattctaatgttagttagttatggatagatccaactatgcttgttggttagttagtaactaactagttagttagtttgttagtgg 43041279  T
Q  635 cttgtagtgcaagttactcaacttagcctataagtacttagc-tttgtattcagttgatatagattgtatttgtatagcagacatctcatatctttcata 733  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||      |||||||||| ||||||||||||| |||||    
T  43041280 cttgtagtgcaagttactcaacttagcctataagtacttagcttttgtattcagttgatataga------ttgtatagcacacatctcatatctctcata 43041373  T
Q  734 ttcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttctctaaattatgtatgtgcatg 833  Q
    ||||||||||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||||| | ||||||| |||||||||||||||||    
T  43041374 ttcaataatagaagagttttatcattcttttgtagtttcctctataagtgtgagtgtgtagagatcattctaatatttctctcaattatgtatgtgcatg 43041473  T
Q  834 ttctatc 840  Q
    |||||||    
T  43041474 ttctatc 43041480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 596 - 840
Target Start/End: Original strand, 43039349 - 43039588
Alignment:
Q  596 gttagttagtaactaactagttagttagtttgttagtggcttgtagtgcaagttactcaacttagcctataagtacttagcttt-gtattcagttgatat 694  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  43039349 gttagttagtaactaactagttagttagtttgttagtggcttgtattgcaagttactcaacttagcctataagtacttatcttttgtattcagttgatat 43039448  T
Q  695 agattgtatttgtatagcagacatctcatatctttcatattcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtag 794  Q
    |||||||||      |||| ||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||  | |||||||||||||    
T  43039449 agattgtat------agcacacatctcatatctctcatattcaatgatagaagagttttatcattcttttgtagtttcctctctaaatgtgagtgtgtag 43039542  T
Q  795 agatcattctattctttctctaaattatgtatgtgcatgttctatc 840  Q
    ||||||||||| | ||||||| ||||||||||||||||||||||||    
T  43039543 agatcattctaatatttctctcaattatgtatgtgcatgttctatc 43039588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 535 - 840
Target Start/End: Original strand, 14196671 - 14196977
Alignment:
Q  535 ttgaagtataattcatattctaatgttagttagctgtggataaatccaactatatttgttggttagtt--------agtaactaactagttagttagttt 626  Q
    |||||||||||||||||||||||||||||||||    |||||||||||||||| ||||||||||||||        ||||||||||||||||||||||||    
T  14196671 ttgaagtataattcatattctaatgttagttagtataggataaatccaactatgtttgttggttagttggttagtaagtaactaactagttagttagttt 14196770  T
Q  627 gttagtggcttgtagtgcaagttactcaacttagcctataagtacttagctttgtattcagttgat-atagattgtatttgtatagcagacatctcatat 725  Q
    ||||| |||||||||||||||||| |||||||| ||||||||||| |   ||||||||| || ||| | |||||||||      |||  |||||||||||    
T  14196771 gttagaggcttgtagtgcaagttattcaacttatcctataagtacatg--tttgtattctgtagattacagattgtat------agctcacatctcatat 14196862  T
Q  726 ctttcatattcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttctctaaattatgta 825  Q
    || ||||||||||||||||||||||||||||||| ||||||||||||||||   |||||||||||||||||||||||||| | ||||||| |||||||||    
T  14196863 ctctcatattcaataatagaagagttttatcatttctttgtagtttcctctttaagtgtgagtgtgtagagatcattctaatttttctctcaattatgta 14196962  T
Q  826 tgtgcatgttctatc 840  Q
    |||||||||||||||    
T  14196963 tgtgcatgttctatc 14196977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 214 - 277
Target Start/End: Complemental strand, 40439808 - 40439745
Alignment:
Q  214 ttctgttaatctatgttttctataccattagtgaaagatattattgtaaaacaaatcacaatta 277  Q
    |||| ||||| ||||||||| |||||||||||||| |||||| ||||||||||| |||||||||    
T  40439808 ttcttttaatttatgttttccataccattagtgaaggatatttttgtaaaacaactcacaatta 40439745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 425 - 475
Target Start/End: Complemental strand, 2871976 - 2871926
Alignment:
Q  425 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataat 475  Q
    ||||||||||| |||||||||||||||||||| |||||||||| |||||||    
T  2871976 caacttatatggcttctttgtgcctgggttgtttggaatgaacgtaataat 2871926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 425 - 475
Target Start/End: Complemental strand, 7452138 - 7452088
Alignment:
Q  425 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataat 475  Q
    ||||||||||| || ||||||| ||||||||||||||||||||| ||||||    
T  7452138 caacttatatggctactttgtgactgggttgtgtggaatgaacaaaataat 7452088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 535 - 567
Target Start/End: Original strand, 43039325 - 43039357
Alignment:
Q  535 ttgaagtataattcatattctaatgttagttag 567  Q
    |||||||||||||||||||||||||||||||||    
T  43039325 ttgaagtataattcatattctaatgttagttag 43039357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 179; Significance: 4e-96; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 535 - 840
Target Start/End: Complemental strand, 37747987 - 37747679
Alignment:
Q  535 ttgaagtataattcatattctaatgttagttagctgtggataaatccaactatatttgttggttagttagt--------aactaactagttagttagttt 626  Q
    ||||||||||||||||||||| |||||||||||  | |||||||||||||||| ||| |||||||||||||        |||||| ||||| ||||||||    
T  37747987 ttgaagtataattcatattctgatgttagttagtagaggataaatccaactatgtttattggttagttagttagtaagtaactaattagttggttagttt 37747888  T
Q  627 gttagtggcttgtagtgcaagttactcaacttagcctataagtacttagcttt-gtattcagttgatatagattgtatttgtatagcagacatctcatat 725  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||      |||| ||||||||||     
T  37747887 gttagtggcttgtagtgcaagttactcaacttagcctataaatacttggcttttgtattcagttgatatagattgtat------agcaaacatctcatac 37747794  T
Q  726 ctttcatattcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttctctaaattatgta 825  Q
    || |||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||| |||||||||  ||||||||    
T  37747793 ctctcatattcaataatagaagagttttatcattcctctgtagtttcctctctaagtgtgagtgtgtagagatcattctaatctttctctcgattatgta 37747694  T
Q  826 tgtgcatgttctatc 840  Q
    |||||||||||||||    
T  37747693 tgtgcatgttctatc 37747679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 535 - 840
Target Start/End: Complemental strand, 37749543 - 37749244
Alignment:
Q  535 ttgaagtataattcatattctaatgttagttagctgtggataaatccaactatatttgttggttagtta--------gtaactaactagttagttagttt 626  Q
    |||||||||||||||||||||||||||||||||  | |||||||||||||||| |||||||||||||||        |||||||||||||||||||||||    
T  37749543 ttgaagtataattcatattctaatgttagttagtagaggataaatccaactatgtttgttggttagttagttagtaagtaactaactagttagttagttt 37749444  T
Q  627 gttagtggcttgtagtgcaagttactcaacttagcctataagtacttagc-tttgtattcagttgatatagattgtatttgtatagcagacatctcatat 725  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||      |||||||||| |||||          
T  37749443 gttagtggcttgtagtgcaagttactcaacttagcctataagtacttaacttttgtattcagttgatataga------ttgtatagcacacatc------ 37749356  T
Q  726 ctttcatattcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttctctaaattatgta 825  Q
       ||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||| ||||||||| |||||||||    
T  37749355 ---tcatattcaataatagaagagttttatcattcctttgtagttttctctctaagtgtgagtgtgtagagatcattctaatctttctctcaattatgta 37749259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 569 - 663
Target Start/End: Complemental strand, 45809872 - 45809774
Alignment:
Q  569 tgtggataaatccaactatatttgttggttagtta----gtaactaactagttagttagtttgttagtggcttgtagtgcaagttactcaacttagcct 663  Q
    ||||||||||||||||||| |||||||||||||||    |||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  45809872 tgtggataaatccaactatgtttgttggttagttacttggtaactaactcgttagttagttagttagaggcttgtagtgcaagttactcaacttagcct 45809774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 604 - 671
Target Start/End: Original strand, 33829589 - 33829656
Alignment:
Q  604 gtaactaactagttagttagtttgttagtggcttgtagtgcaagttactcaacttagcctataagtac 671  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33829589 gtaactaactagttagttagtttgttagtagcttgtagtgcaagttactcaacttagcctataagtac 33829656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 425 - 467
Target Start/End: Original strand, 15654059 - 15654101
Alignment:
Q  425 caacttatatgacttctttgtgcctgggttgtgtggaatgaac 467  Q
    ||||||||||| ||||||||||| || ||||||||||||||||    
T  15654059 caacttatatggcttctttgtgcatgagttgtgtggaatgaac 15654101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 474
Target Start/End: Complemental strand, 13439827 - 13439790
Alignment:
Q  437 cttctttgtgcctgggttgtgtggaatgaacataataa 474  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  13439827 cttctttgtgcctgggttgtttggaatgaacgtaataa 13439790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 474
Target Start/End: Complemental strand, 28327142 - 28327093
Alignment:
Q  425 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataa 474  Q
    |||||||| || ||||||||||| |||||||| |||||||||| ||||||    
T  28327142 caacttatttggcttctttgtgcttgggttgtttggaatgaacgtaataa 28327093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 474
Target Start/End: Complemental strand, 30385986 - 30385937
Alignment:
Q  425 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataa 474  Q
    ||||||||||| ||||| |||| ||||||||| |||||||||| ||||||    
T  30385986 caacttatatggcttctatgtgtctgggttgtttggaatgaacgtaataa 30385937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 152; Significance: 5e-80; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 275 - 534
Target Start/End: Complemental strand, 14528309 - 14528050
Alignment:
Q  275 ttattattatcgtgcactacctttgctactctatggtcgttagtgcgggactggattggcttttcggcggtggactcccaaattatttccaatcatttct 374  Q
    ||||||||||| ||||||||||||||||||||| ||  |||||||| ||||||||||| ||||||| | |||||||| || ||||||||| |||||||||    
T  14528309 ttattattatcatgcactacctttgctactctacggcagttagtgcaggactggattgacttttcgtcagtggactctcagattatttccgatcatttct 14528210  T
Q  375 tgcagtttacacatttgacaagtagtgggaaagctcaacgctcgtttctacaacttatatgacttctttgtgcctgggttgtgtggaatgaacataataa 474  Q
    || |||||||||||| |||| |||||||||||||||||||||| ||||||||  ||||||| ||||||||||||| ||||||||||||||||| ||||||    
T  14528209 tgtagtttacacattcgacaggtagtgggaaagctcaacgctcatttctacagtttatatggcttctttgtgccttggttgtgtggaatgaacgtaataa 14528110  T
Q  475 tatattattcaataattttgaaacccaaattccccgattgttggataaagttaaatattt 534  Q
    |||||||||||||||||  | |||||  |||||||| ||||||||||| |||||||||||    
T  14528109 tatattattcaataattcagcaacccccattccccggttgttggataacgttaaatattt 14528050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 275 - 532
Target Start/End: Complemental strand, 14533035 - 14532778
Alignment:
Q  275 ttattattatcgtgcactacctttgctactctatggtcgttagtgcgggactggattggcttttcggcggtggactcccaaattatttccaatcatttct 374  Q
    ||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||| ||||||  |||||||||| || ||||||||| ||| |||||    
T  14533035 ttattattatcgtgcactacctttgctactctatggcagttagtgcaggactggattgacttttcatcggtggactctcagattatttccgatcctttct 14532936  T
Q  375 tgcagtttacacatttgacaagtagtgggaaagctcaacgctcgtttctacaacttatatgacttctttgtgcctgggttgtgtggaatgaacataataa 474  Q
    || |||||| | ||| |||| ||| |||||||| || |||||| ||||||||  ||||||||||||||||||||| ||||||||||||||||| ||||||    
T  14532935 tgtagtttatatattcgacaggtaatgggaaaggtcgacgctcatttctacagattatatgacttctttgtgccttggttgtgtggaatgaacgtaataa 14532836  T
Q  475 tatattattcaataattttgaaacccaaattccccgattgttggataaagttaaatat 532  Q
    |||  ||||||| ||||  | |||||  |||||||| ||||||||||| |||| ||||    
T  14532835 tatgctattcaaaaattccgcaacccccattccccggttgttggataaggttatatat 14532778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 535 - 660
Target Start/End: Original strand, 31798781 - 31798913
Alignment:
Q  535 ttgaagtataattcatattctaatgttagttagctgtggataaatccaactatatttgttggttagttag--------taactaactagttagttagttt 626  Q
    |||||||||||||||||||||||| ||||| |  ||||||||||| ||||||| ||||||||||||||||        ||||||||||||||||| ||||    
T  31798781 ttgaagtataattcatattctaatattagtaat-tgtggataaattcaactatgtttgttggttagttagttatttagtaactaactagttagtttgttt 31798879  T
Q  627 gttagtggcttgtagtgcaagttactcaacttag 660  Q
    ||||||||||||||||||||||||||||| ||||    
T  31798880 gttagtggcttgtagtgcaagttactcaatttag 31798913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 378 - 467
Target Start/End: Complemental strand, 4406845 - 4406756
Alignment:
Q  378 agtttacacatttgacaagtagtgggaaagctcaacgctcgtttctacaacttatatgacttctttgtgcctgggttgtgtggaatgaac 467  Q
    ||||||| ||| ||| | || |||| ||||||  ||| |||||||| || || |||||||||||||||||||||||||||||||||||||    
T  4406845 agtttactcatatgataggtggtggtaaagctagacgttcgtttctgcagctaatatgacttctttgtgcctgggttgtgtggaatgaac 4406756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 719 - 804
Target Start/End: Original strand, 34391113 - 34391199
Alignment:
Q  719 ctcatatctttcatattcaataatagaagagtttt-atcattcctttgtagtttcctctc-atagtgtgagtgtgtagagatcattct 804  Q
    ||||||||| ||| ||||||||||| ||| ||||| |||||||||||||||||||||||| | ||||||||||||| | |||||||||    
T  34391113 ctcatatctctcacattcaataata-aagtgtttttatcattcctttgtagtttcctctctaaagtgtgagtgtgtggcgatcattct 34391199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 719 - 803
Target Start/End: Complemental strand, 34486445 - 34486361
Alignment:
Q  719 ctcatatctttcatattcaataatagaagagttttatcattcctttgtagtttcctc-tcatagtgtgagtgtgtagagatcattc 803  Q
    ||||||||| ||| ||| ||||||| |||||||||||||||| |||||||||||||| | | | ||||||||||| ||||||||||    
T  34486445 ctcatatctctcacatttaataata-aagagttttatcattcttttgtagtttcctctttaaaatgtgagtgtgtggagatcattc 34486361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 425 - 467
Target Start/End: Complemental strand, 1682832 - 1682790
Alignment:
Q  425 caacttatatgacttctttgtgcctgggttgtgtggaatgaac 467  Q
    |||||||| || ||||| |||||||||||||||||||||||||    
T  1682832 caacttatttggcttctctgtgcctgggttgtgtggaatgaac 1682790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 133; Significance: 1e-68; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 535 - 840
Target Start/End: Original strand, 38206827 - 38207132
Alignment:
Q  535 ttgaagtataattcatattctaatgttagttagctgtggataaatccaactatatttgttggtta----gttagtaactaactagttagttagtttgtta 630  Q
    ||||||||||||| |||||||||||||||||||  | |||||||| ||||||| |||||||||||    |||||||||||||||||||||||||||||||    
T  38206827 ttgaagtataattaatattctaatgttagttagtagaggataaattcaactatgtttgttggttagttagttagtaactaactagttagttagtttgtta 38206926  T
Q  631 gtggcttgtagtgcaagttactcaacttagcct---ataagtacttagctttgtattcagttga-tatagattgtatttgtatagcagacatctcatatc 726  Q
    | ||||||||||||||||||||||||||||| |   ||||||||  |  |||||||||||| || || |||      ||||||| || ||||||  ||||    
T  38206927 gaggcttgtagtgcaagttactcaacttagcttataataagtac--atgtttgtattcagtagattacaga------ttgtataacacacatcttgtatc 38207018  T
Q  727 tttcatattcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttctctaaattatgtat 826  Q
    | |||||||||||||||||||||||||||||||||||| |||||| |||||  | ||| | |||||||||||||||||| ||||||||| ||||||| ||    
T  38207019 tctcatattcaataatagaagagttttatcattcctttatagttttctctctaaatgtaaatgtgtagagatcattctaatctttctcttaattatgcat 38207118  T
Q  827 gtgcatgttctatc 840  Q
    ||||||||||||||    
T  38207119 gtgcatgttctatc 38207132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 614 - 840
Target Start/End: Original strand, 3585452 - 3585671
Alignment:
Q  614 agttagttagtttgttagtggcttgtagtgcaagttactcaacttagcctataagtacttagctttgtattcagttgat-atagattgtatttgtatagc 712  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |   |||||||| ||| ||| | |||||||||      |||    
T  3585452 agttagttagtttgttagaggcttgtagtgcaagttactcaacttagcctatacgtacatg--tttgtattaagtagattacagattgtat------agc 3585543  T
Q  713 agacatctcatatctttcatattcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttc 812  Q
    | ||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||    
T  3585544 acacatctcatatctcttatattcaataacagaagagttttatcattcctttgtagtttcctctctaagtgtgagtgtgtagagatcattctaatctttc 3585643  T
Q  813 tctaaattatgtatgtgcatgttctatc 840  Q
    ||| |||||||||| |||||||||||||    
T  3585644 tctcaattatgtatatgcatgttctatc 3585671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 569 - 673
Target Start/End: Original strand, 929847 - 929951
Alignment:
Q  569 tgtggataaatccaactatatttgttggttagttagtaactaactagttagttagtttgttagtggcttgtagtgcaagttactcaacttagcctataag 668  Q
    ||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||  |||| ||||||||||||||    
T  929847 tgtggataaatccaattatgtttgttagttagttagtaactaactagttagttagtttgtttgtggcttgtagtgcaagaaactccacttagcctataag 929946  T
Q  669 tactt 673  Q
    |||||    
T  929947 tactt 929951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 535 - 616
Target Start/End: Original strand, 31477944 - 31478025
Alignment:
Q  535 ttgaagtataattcatattctaatgttagttagctgtggataaatccaactatatttgttggttagttagtaactaactagt 616  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  31477944 ttgaagtataattcatattctaatgttagttagttgtggataaatccaactatgtttgttggttagttagtaaccaactagt 31478025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 569 - 663
Target Start/End: Original strand, 7493580 - 7493674
Alignment:
Q  569 tgtggataaatccaactatatttgttggttagttagtaactaactagttagttagtttgttagtggcttgtagtgcaagttactcaacttagcct 663  Q
    ||||||||||| ||||||| ||||||||||||||| | | ||||||  ||||||||| ||||| |||||||||||||||||||||||||||||||    
T  7493580 tgtggataaattcaactatgtttgttggttagttacttagtaactaactagttagttagttagaggcttgtagtgcaagttactcaacttagcct 7493674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 535 - 605
Target Start/End: Original strand, 3584475 - 3584545
Alignment:
Q  535 ttgaagtataattcatattctaatgttagttagctgtggataaatccaactatatttgttggttagttagt 605  Q
    ||||||||||||||||||||||||||||||| |  | |||||||| ||||||| |||||||||||||||||    
T  3584475 ttgaagtataattcatattctaatgttagtttgtagaggataaattcaactatgtttgttggttagttagt 3584545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 429 - 475
Target Start/End: Complemental strand, 47116070 - 47116024
Alignment:
Q  429 ttatatgacttctttgtgcctgggttgtgtggaatgaacataataat 475  Q
    ||||||||||| |||||||||| ||||||||||||||||| ||||||    
T  47116070 ttatatgacttttttgtgcctgagttgtgtggaatgaacaaaataat 47116024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 425 - 467
Target Start/End: Complemental strand, 36305570 - 36305528
Alignment:
Q  425 caacttatatgacttctttgtgcctgggttgtgtggaatgaac 467  Q
    ||||||||||| || ||||||| ||||||||||||||||||||    
T  36305570 caacttatatggctactttgtgtctgggttgtgtggaatgaac 36305528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 282
Target Start/End: Original strand, 12967297 - 12967354
Alignment:
Q  225 tatgttttctataccattagtgaaagatattattgtaaaacaaatcacaattattatt 282  Q
    ||||||||| ||||||||| | || |||||| ||||||||||| ||||||||| ||||    
T  12967297 tatgttttccataccattaataaaggatatttttgtaaaacaactcacaattaatatt 12967354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 474
Target Start/End: Original strand, 32353663 - 32353700
Alignment:
Q  437 cttctttgtgcctgggttgtgtggaatgaacataataa 474  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  32353663 cttctttgtgcctgggttgtttggaatgaacgtaataa 32353700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 474
Target Start/End: Complemental strand, 38231473 - 38231424
Alignment:
Q  425 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataa 474  Q
    ||||| ||||||||||| |||||||| ||||| |||||||||| ||||||    
T  38231473 caactaatatgacttctatgtgcctgagttgtttggaatgaacgtaataa 38231424  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 474
Target Start/End: Original strand, 48073798 - 48073835
Alignment:
Q  437 cttctttgtgcctgggttgtgtggaatgaacataataa 474  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  48073798 cttctttgtgcctgggttgtttggaatgaacgtaataa 48073835  T

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Target: chr4 (Bit Score: 65; Significance: 4e-28; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 535 - 798
Target Start/End: Original strand, 53611218 - 53611450
Alignment:
Q  535 ttgaagtataattcatattctaatgttagttagctgtggataaatccaactatatttgttggttagttagtaactaactagttagttagtttgttagtgg 634  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||               ||||||||||||| |||||||     
T  53611218 ttgaagtataattcatattctaatgttagttagttgtggataaatccaactatgtttgttggt---------------tagttagttagttggttagtga 53611302  T
Q  635 cttgtagtgcaagttactcaacttagcctataagtacttag-ctttgtattcagttgatatagattgtatttgtatagcagacatctcatatctttcata 733  Q
    |||||||||||||| |||| ||||||||||| |||||||||  ||||| |||||||              ||  ||| || |   ||||||||| ||| |    
T  53611303 cttgtagtgcaagtaactccacttagcctatgagtacttagtttttgtgttcagtt-------------ctttaatatcaca---ctcatatctctcaaa 53611386  T
Q  734 ttcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagat 798  Q
    |||||||||| |||||||||||||||||||||||||||||||||  | |||||||||||||||||    
T  53611387 ttcaataata-aagagttttatcattcctttgtagtttcctctctaaatgtgagtgtgtagagat 53611450  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 425 - 475
Target Start/End: Original strand, 3130333 - 3130383
Alignment:
Q  425 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataat 475  Q
    |||||||| || |||||||||||||||||||||||||||||||| ||||||    
T  3130333 caacttatttggcttctttgtgcctgggttgtgtggaatgaacaaaataat 3130383  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 621 - 695
Target Start/End: Complemental strand, 29298626 - 29298553
Alignment:
Q  621 tagtttgttagtggcttgtagtgcaagttactcaacttagcctataagtacttagctttgtattcagttgatata 695  Q
    ||||| ||||| ||| ||||| |||||| |||||||||||||||||||||||| | |||||||||| ||||||||    
T  29298626 tagttagttagcggcatgtagagcaagtaactcaacttagcctataagtactt-gttttgtattcaattgatata 29298553  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 425 - 467
Target Start/End: Original strand, 7663592 - 7663634
Alignment:
Q  425 caacttatatgacttctttgtgcctgggttgtgtggaatgaac 467  Q
    ||||||||||| ||||||||||| |||||||||||||||||||    
T  7663592 caacttatatggcttctttgtgcatgggttgtgtggaatgaac 7663634  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 161
Target Start/End: Original strand, 51203233 - 51203264
Alignment:
Q  130 ttttcgtccctataaatattgcgaattttgat 161  Q
    ||||||||||||||||||||||||||||||||    
T  51203233 ttttcgtccctataaatattgcgaattttgat 51203264  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 264
Target Start/End: Original strand, 31063631 - 31063681
Alignment:
Q  214 ttctgttaatctatgttttctataccattagtgaaagatattattgtaaaa 264  Q
    |||| ||||| ||||||||| |||||||||||||| |||||| ||||||||    
T  31063631 ttcttttaatttatgttttccataccattagtgaaggatatttttgtaaaa 31063681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 425 - 467
Target Start/End: Complemental strand, 47540711 - 47540669
Alignment:
Q  425 caacttatatgacttctttgtgcctgggttgtgtggaatgaac 467  Q
    |||||||| || ||||| |||||||||||||||||||||||||    
T  47540711 caacttatttggcttctctgtgcctgggttgtgtggaatgaac 47540669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 474
Target Start/End: Complemental strand, 20673495 - 20673446
Alignment:
Q  425 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataa 474  Q
    ||||| ||||| ||||| ||||||| |||||| |||||||||||||||||    
T  20673495 caactaatatggcttctatgtgcctaggttgtttggaatgaacataataa 20673446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 474
Target Start/End: Original strand, 23873842 - 23873879
Alignment:
Q  437 cttctttgtgcctgggttgtgtggaatgaacataataa 474  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  23873842 cttctttgtgcctgggttgtttggaatgaacgtaataa 23873879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 474
Target Start/End: Complemental strand, 55298397 - 55298360
Alignment:
Q  437 cttctttgtgcctgggttgtgtggaatgaacataataa 474  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  55298397 cttctttgtgcctgggttgtttggaatgaacgtaataa 55298360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 366 - 475
Target Start/End: Complemental strand, 31862438 - 31862329
Alignment:
Q  366 atcatttcttgcagtttacacatttgacaagtagtgggaaagctcaacgctcgtttctacaacttatatgacttctttgtgcctgggttgtgtggaatga 465  Q
    ||||||| ||||||||||| ||| ||||| || |||| ||||||  ||| || ||  | ||||| ||||| |||||||||| ||||||| ||||||||||    
T  31862438 atcatttattgcagtttactcatatgacaggtggtggcaaagctagacggtctttcatgcaactaatatggcttctttgtgtctgggttttgtggaatga 31862339  T
Q  466 acataataat 475  Q
    ||||||||||    
T  31862338 acataataat 31862329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 569 - 605
Target Start/End: Complemental strand, 6600782 - 6600746
Alignment:
Q  569 tgtggataaatccaactatatttgttggttagttagt 605  Q
    ||||||||||||||||||| |||||||||||||||||    
T  6600782 tgtggataaatccaactatgtttgttggttagttagt 6600746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 425 - 465
Target Start/End: Original strand, 10487260 - 10487300
Alignment:
Q  425 caacttatatgacttctttgtgcctgggttgtgtggaatga 465  Q
    |||||||| || |||||||||||||||||||||||||||||    
T  10487260 caacttatttggcttctttgtgcctgggttgtgtggaatga 10487300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 425 - 475
Target Start/End: Complemental strand, 34480742 - 34480692
Alignment:
Q  425 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataat 475  Q
    ||||||||||| ||||| |||| ||||||||| |||||||||| |||||||    
T  34480742 caacttatatggcttctatgtgtctgggttgtttggaatgaacgtaataat 34480692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 474
Target Start/End: Original strand, 34858059 - 34858096
Alignment:
Q  437 cttctttgtgcctgggttgtgtggaatgaacataataa 474  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  34858059 cttctttgtgcctgggttgtttggaatgaacgtaataa 34858096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 600 - 692
Target Start/End: Complemental strand, 4810081 - 4809991
Alignment:
Q  600 gttagtaactaactagttagttagtttgttagtggcttgtagtgcaagttactcaacttagcctataagtacttagctttgtattcagttgat 692  Q
    ||||||||||||||| |||||||||| || | || ||||| |||||||| |||  |||||||||||||||||||   ||||||||||||||||    
T  4810081 gttagtaactaactacttagttagttggtcaatgacttgttgtgcaagtaactttacttagcctataagtactt--gtttgtattcagttgat 4809991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 425 - 474
Target Start/End: Complemental strand, 7146827 - 7146778
Alignment:
Q  425 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataa 474  Q
    ||||||||||| |||||||||||||||||||| |||||||||| ||||||    
T  7146827 caacttatatggcttctttgtgcctgggttgtttggaatgaacgtaataa 7146778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 425 - 467
Target Start/End: Original strand, 30167699 - 30167741
Alignment:
Q  425 caacttatatgacttctttgtgcctgggttgtgtggaatgaac 467  Q
    ||||||||||| ||||||||||| |||||||||||||||||||    
T  30167699 caacttatatggcttctttgtgcatgggttgtgtggaatgaac 30167741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 358 - 474
Target Start/End: Original strand, 2813787 - 2813903
Alignment:
Q  358 tatttccaatcatttcttgcagtttacacatttgacaagtagtgggaaagctcaacgctcgtttctacaacttatatgacttctttgtgcctgggttgtg 457  Q
    |||||| |||||||| || ||||| || ||||||||| || ||||    |||  ||| |||||| | ||||| ||||||||||| ||||||||||| ||     
T  2813787 tatttcaaatcattttttacagttcactcatttgacaggtggtggtgttgctagacgttcgtttatgcaactaatatgacttctatgtgcctgggtagtc 2813886  T
Q  458 tggaatgaacataataa 474  Q
    |||||||||| ||||||    
T  2813887 tggaatgaacgtaataa 2813903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 735 - 804
Target Start/End: Complemental strand, 496648 - 496582
Alignment:
Q  735 tcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattct 804  Q
    ||||||||| |||||||||||  ||||||||||||||| |||    ||||||||||||||||||||||||    
T  496648 tcaataata-aagagttttatttttcctttgtagtttcttctac--gtgtgagtgtgtagagatcattct 496582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 466
Target Start/End: Complemental strand, 9378883 - 9378842
Alignment:
Q  425 caacttatatgacttctttgtgcctgggttgtgtggaatgaa 466  Q
    ||||| ||||||||||| |||||||||||||| |||||||||    
T  9378883 caactcatatgacttctgtgtgcctgggttgtttggaatgaa 9378842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 474
Target Start/End: Complemental strand, 23601547 - 23601510
Alignment:
Q  437 cttctttgtgcctgggttgtgtggaatgaacataataa 474  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  23601547 cttctttgtgcctgggttgtttggaatgaacgtaataa 23601510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 795 - 840
Target Start/End: Original strand, 54017245 - 54017290
Alignment:
Q  795 agatcattctattctttctctaaattatgtatgtgcatgttctatc 840  Q
    ||||||||||| ||||||||| |||| ||||||||| |||||||||    
T  54017245 agatcattctaatctttctctcaattttgtatgtgcgtgttctatc 54017290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 733 - 800
Target Start/End: Complemental strand, 17130 - 17063
Alignment:
Q  733 attcaataatagaagagttttatcattcctttgtagtttcctctc-atagtgtgagtgtgtagagatca 800  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| | |||||| |||||| |||||||    
T  17130 attcaataata-aagagttttatcattcctttgtagtttcctctctaaagtgtgtgtgtgtggagatca 17063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 733 - 800
Target Start/End: Complemental strand, 1148 - 1081
Alignment:
Q  733 attcaataatagaagagttttatcattcctttgtagtttcctctc-atagtgtgagtgtgtagagatca 800  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| | |||||| |||||| |||||||    
T  1148 attcaataata-aagagttttatcattcctttgtagtttcctctctaaagtgtgtgtgtgtggagatca 1081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 425 - 467
Target Start/End: Complemental strand, 7461 - 7419
Alignment:
Q  425 caacttatatgacttctttgtgcctgggttgtgtggaatgaac 467  Q
    ||||||||||| ||||||||||| |||||||||||||||||||    
T  7461 caacttatatggcttctttgtgcatgggttgtgtggaatgaac 7419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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