View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19050_low_20 (Length: 418)
Name: NF19050_low_20
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19050_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 5254696 - 5255109
Alignment:
| Q |
1 |
ctactagaataaagtaatatttagaagatgtgacaataataaaatgcctctgttttgatcttttaaatcttactaatgtttagctcggcaattnnnnnnn |
100 |
Q |
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| T |
5254696 |
ctactagaataaagtaatatttagtagatgtgacaataataaaatgcctctgttttgatcttttaaatcttactaatgtttagctcggcaattaaaaaaa |
5254795 |
T |
|
| Q |
101 |
tttagactatattcaaattaattatttttaatgtaagggtaaaataaaattcattaataggaactgttgtacgaaggtgtgcatgacttgtggatttccg |
200 |
Q |
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| T |
5254796 |
tttagactatattcaaattaattatttttaatgtaagggtaaaataaaattcattaataggaactgttgtacgaaggtgtgcatgacttgtggatttccg |
5254895 |
T |
|
| Q |
201 |
accaagcaggttttattgtaaggagtcaagtgttaacctcggagacatgtgaatgaactctttgcaagtcatttgcagctagatttgctaacatgtgatg |
300 |
Q |
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| T |
5254896 |
accaagcaggttttattgtaaggagtcaagtgttaacctcggagacatgtgaatgaactctttgcaagtcatttgcagctagatttgctaacatgtgatg |
5254995 |
T |
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| Q |
301 |
actcatatgaaagccaactattctgc-----aaaccctttgaaaaacctgatgt-------------ttgtctacaacaaacaagtttttgatccaatat |
382 |
Q |
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| T |
5254996 |
actcatatgcaagccaactattctgcaaattaaaccctttgaaaaatctgatgtggtataaacaatgttgcttacaacaaacaagtttttgatccaatat |
5255095 |
T |
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| Q |
383 |
ctctgaaaagcatc |
396 |
Q |
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| T |
5255096 |
ctctgaaaagcatc |
5255109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 181 - 262
Target Start/End: Original strand, 5180321 - 5180402
Alignment:
| Q |
181 |
gcatgacttgtggatttccgaccaagcaggttttattgtaaggagtcaagtgttaacctcggagacatgtgaatgaactctt |
262 |
Q |
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| T |
5180321 |
gcatgacttgtggatttccgaccaagcaggttttattgtaaggagtcaagtgttaacctcagagacatgtgaatgaactctt |
5180402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 39 - 179
Target Start/End: Original strand, 5180037 - 5180180
Alignment:
| Q |
39 |
ataaaatgcctctgttttgatct----tttaaatcttactaatgtttagctcggcaattnnnnnnntttagactatattcaaattaattatttttaatgt |
134 |
Q |
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| T |
5180037 |
ataaaatgcctctgttttgatttgatcttttaatcttagtaatttttagctcggcaattaaaaaa-tttagattatattcaaattaattatttttgacgt |
5180135 |
T |
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| Q |
135 |
aagggtaaaataaaattcattaataggaactgttgtacgaaggtg |
179 |
Q |
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| T |
5180136 |
aagtgaaaaataaaattcattaataggaactgttgtacgaaggtg |
5180180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 150
Target Start/End: Original strand, 5281805 - 5281927
Alignment:
| Q |
33 |
acaataataaaatgcctctgttttgat-----cttttaaatcttactaatgtttagctcggcaattnnnnnnntttagactatattcaaattaattattt |
127 |
Q |
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||||||||||||||||||||||||||| |||||| |||||| | |||||||||||||||||| ||||||||| ||||||||||||| || |
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| T |
5281805 |
acaataataaaatgcctctgttttgatttgatcttttacatcttagtcatgtttagctcggcaattaaaaaaatttagactaaattcaaattaatttttg |
5281904 |
T |
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| Q |
128 |
ttaatgtaagggtaaaataaaat |
150 |
Q |
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|||||||||| | |||||||||| |
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| T |
5281905 |
ttaatgtaagtgaaaaataaaat |
5281927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 5282001 - 5282055
Alignment:
| Q |
206 |
gcaggttttattgtaaggagtcaagtgttaacctcggagacatgtgaatgaactc |
260 |
Q |
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| T |
5282001 |
gcaggttttattgtaaggagtcaagtgttaacctgagagacatgtgaatgaactc |
5282055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 350 - 396
Target Start/End: Original strand, 5282164 - 5282210
Alignment:
| Q |
350 |
ttgtctacaacaaacaagtttttgatccaatatctctgaaaagcatc |
396 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5282164 |
ttgcctacaacaaacaagtttttgatccaatatctctgaaaagcatc |
5282210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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