View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19050_low_21 (Length: 413)
Name: NF19050_low_21
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19050_low_21 |
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| [»] scaffold0090 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 11 - 395
Target Start/End: Complemental strand, 28426688 - 28426304
Alignment:
| Q |
11 |
cacagaactattcttcagcgtgtatctataatacacttcatcttcgttgttgacaaatacaaaatcataaagtggattaggtttcaatccgactactcca |
110 |
Q |
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| T |
28426688 |
cacagaactattcttcagcgtgtatctataatacacttcatcttcgttgttgacaaatacaaaatcataaagtggattaggtttcaatccgactactcca |
28426589 |
T |
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| Q |
111 |
cttgacggagcattccatggtcctgtcctatggattttagtcgaccccttcaatattacgctttctggattacttgtaagcaccataatttgaatcacat |
210 |
Q |
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| T |
28426588 |
cttgacggagcattccatggtcctgtcctatggattttagtcgagcccttcaatattacgctttctggattacttgtaagcaccataatttgaattacat |
28426489 |
T |
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| Q |
211 |
ctcctgaagatggatcctcttcatttctccaagcagtcatattccagactagacccaattttcgattccatccactcttcattccagctaatagtgtatc |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28426488 |
ctcctgaagatggatcctcttcatttctccaagcagtcatattccagactagacccaattttcgattccatccacacttcattccagctaatagtgtatc |
28426389 |
T |
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| Q |
311 |
acaaggatggtcaaagccttgccacaaaaaactttcttcatttttatccttctcatctctgagcactaaattaccattgttcaag |
395 |
Q |
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| T |
28426388 |
acaaggatggtcaaagccttgccacaaaaaactttcttcatttttatccttctcatctctgagcactaaattaccattgttcaag |
28426304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 39 - 395
Target Start/End: Complemental strand, 28418127 - 28417771
Alignment:
| Q |
39 |
taatacacttcatcttcgttgttgacaaatacaaaatcataaagtggattaggtttcaatccgactactccacttgacggagcattccatggtcctgtcc |
138 |
Q |
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| T |
28418127 |
taatacacttcgtcttcattgttgacaactttataatcataaagcgggttgggtttcattccgacaactccactagagagaggattccatggtccagacc |
28418028 |
T |
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| Q |
139 |
tatggattttagtcgaccccttcaatattacgctttctggattacttgtaagcaccataatttgaatcacatctcctgaagatggatcctcttcatttct |
238 |
Q |
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| T |
28418027 |
tacagattttagttgagcccttccatatcatgctttcgggattgcttgtaaagaccacagatgcatataaatctcctgaagacggatcgtcttcattttt |
28417928 |
T |
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| Q |
239 |
ccaagcagtcatattccagactagacccaattttcgattccatccactcttcattccagctaatagtgtatcacaaggatggtcaaagccttgccacaaa |
338 |
Q |
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| T |
28417927 |
ccaagcagtgagattccaataaaaatctaattttcgattatatccaaacgtcattccaggtaatagtgtatcacaaggatggtcaaacccttgccacaaa |
28417828 |
T |
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| Q |
339 |
aaactttcttcatttttatccttctcatctctgagcactaaattaccattgttcaag |
395 |
Q |
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| T |
28417827 |
aaactttcttcattgttatccttctcatctctaagtactaaattaccattgttcaag |
28417771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 22692089 - 22692160
Alignment:
| Q |
281 |
tccactcttcattccagctaatagtgtatcacaaggatggtcaaagccttgccacaaaaaactttcttcatt |
352 |
Q |
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| T |
22692089 |
tccaatcttcattcccggtaacaacgtatcacagggatagtcaaagccttgccacaaaaaactttctccatt |
22692160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 350
Target Start/End: Original strand, 10226 - 10298
Alignment:
| Q |
278 |
ccatccactcttcattccagctaatagtgtatcacaaggatggtcaaagccttgccacaaaaaactttcttca |
350 |
Q |
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| T |
10226 |
ccatccagccttcattcctgataatattgtatcacaaggataatcaaaactttgccacaaaaaatgttcttca |
10298 |
T |
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