View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19050_low_22 (Length: 409)

Name: NF19050_low_22
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19050_low_22
NF19050_low_22
[»] chr8 (3 HSPs)
chr8 (18-397)||(2245635-2246014)
chr8 (171-244)||(31474639-31474711)
chr8 (171-297)||(1286647-1286772)
[»] chr4 (2 HSPs)
chr4 (146-279)||(41821425-41821558)
chr4 (151-299)||(53785854-53786001)
[»] chr1 (3 HSPs)
chr1 (173-338)||(15756987-15757150)
chr1 (192-299)||(17459043-17459150)
chr1 (187-297)||(41879864-41879974)
[»] chr5 (3 HSPs)
chr5 (139-293)||(34224382-34224534)
chr5 (187-297)||(5732999-5733111)
chr5 (171-240)||(20808701-20808770)
[»] chr7 (2 HSPs)
chr7 (171-297)||(1879856-1879978)
chr7 (154-278)||(37355573-37355695)
[»] chr2 (1 HSPs)
chr2 (146-396)||(731963-732211)


Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Complemental strand, 2246014 - 2245635
Alignment:
Q  18 aagaacagtgcagaagcaaaatgctcaggatgcagtattagattcaaaactgatggatactactagaaccatacaccacatatatcgctccttaaaatgg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2246014 aagaacagtgcagaagcaaaatgctcaggatgcagtattagattcaaaactgatggatactactagaaccatacaccacatatatcactccttaaaatgg 2245915  T
Q  118 tttgtataacatattaagatctgttagttttgtttgttaattcaagttaatcaagtgatgtaatcatacttagttggttaatcacattagagttttagtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2245914 tttgtataacatattaagatctgttagttttgtttgttaattcaagttaatcaagtgatgtaatcatacttagttggttaatcacattagagttttagtt 2245815  T
Q  218 tgttatggattagttacaagtttcctagaatatagcttatatttgttagagtttgttacttagcgtgtgcttcaagcaaccttagcatgtaattgtatat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2245814 tgttatggattagttacaagtttcctagaatatagcttatatttgttagagtttgttacttagcgtgtgcttcaaacaaccttagcatgtaattgtatat 2245715  T
Q  318 aacctacttcacttgtacatttttcatatcttaataacacaatacaactacttctattctcaatatactttcattcttca 397  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2245714 aacctacttcacttggacatttttcatatcttaataacacaatacaactacttctattctcaatatactttcattcttca 2245635  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 171 - 244
Target Start/End: Complemental strand, 31474711 - 31474639
Alignment:
Q  171 agtgatgtaatcatacttagttggttaatcacattagagttttagtttgttatggattagttacaagtttccta 244  Q
    ||||||||||||||  ||||||||||||||||||| || |||||||||||||| ||||||||||||||| ||||    
T  31474711 agtgatgtaatcatgtttagttggttaatcacatttga-ttttagtttgttattgattagttacaagttcccta 31474639  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 171 - 297
Target Start/End: Original strand, 1286647 - 1286772
Alignment:
Q  171 agtgatgtaatcatacttagttggttaatcacattagagttttagtttgtta-tggattagttacaagtttcctagaatatagcttatatttgttagagt 269  Q
    |||||| ||||||| ||||||||||||||||||||  | ||||||||||||| | | ||| |||||||| |||| |||  |||||||   ||| ||| ||    
T  1286647 agtgatataatcat-cttagttggttaatcacatt-tacttttagtttgttacttggttatttacaagtctccttgaaagtagcttaaggttgatagggt 1286744  T
Q  270 ttgttacttagcgtgtgcttcaagcaac 297  Q
    ||||||||| || ||| |||||||||||    
T  1286745 ttgttactttgcttgtacttcaagcaac 1286772  T

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Target: chr4 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 146 - 279
Target Start/End: Complemental strand, 41821558 - 41821425
Alignment:
Q  146 tttgtttgttaattcaagttaatcaagtgatgtaatcatacttagttggttaatcacattagagttttagtttgttatggattagttacaagtttcctag 245  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||     
T  41821558 tttgtttgttaattcaagttaatcaagtgatataatcatacttagttggttaatcacattagagatttagttttttatggattagttacaaatttcctaa 41821459  T
Q  246 aatatagcttatatttgttagagtttgttactta 279  Q
    ||||||| ||||||||||||| ||||||||||||    
T  41821458 aatatagtttatatttgttagggtttgttactta 41821425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 299
Target Start/End: Original strand, 53785854 - 53786001
Alignment:
Q  151 ttgttaattcaagttaatcaagtgatgtaatcatacttagttggttaatcacatt-agagttttagtttgttatggattagttacaagtttcctagaata 249  Q
    ||||||||||||||| |    ||||| |||||| ||| ||| ||||||||||||| || ||||| |||||||| | ||| |||||||||||  |||||      
T  53785854 ttgttaattcaagtttacttggtgatataatcacactcagt-ggttaatcacatttagtgtttttgtttgttaagaatttgttacaagtttgttagaaac 53785952  T
Q  250 tagcttatatttgttagagtttgttacttagcgtgtgcttcaagcaacct 299  Q
    ||||||||||  ||||| ||||||||| |||| |||||||||||||||||    
T  53785953 tagcttatata-gttagggtttgttacatagcttgtgcttcaagcaacct 53786001  T

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Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 173 - 338
Target Start/End: Original strand, 15756987 - 15757150
Alignment:
Q  173 tgatgtaatcatacttagttggttaatcacattagagttttagtttgttatg-gattagttacaagtttcctagaatatagcttatatttgttagagttt 271  Q
    ||||||||||||  |||||||||||||||||||||  ||||||||||||||  ||||||||||| |||||||||||| ||||||||  ||||||| ||||    
T  15756987 tgatgtaatcatgtttagttggttaatcacattag--ttttagtttgttatttgattagttacatgtttcctagaatttagcttatggttgttagggttt 15757084  T
Q  272 gttacttagcgtgtgcttcaagcaaccttagcatgtaattgtatataacctacttcacttgtacatt 338  Q
     |||||| || ||| |||||||||| |||| |||  | |||||||||| | | ||||||||||||||    
T  15757085 attactttgcttgtacttcaagcaa-cttatcatagacttgtatataagccaattcacttgtacatt 15757150  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 192 - 299
Target Start/End: Complemental strand, 17459150 - 17459043
Alignment:
Q  192 tggttaatcacattagagtttt-agtttgttatggattagttacaagtttcctagaatatagcttatatttgttagagtttgttacttagcgtgtgcttc 290  Q
    |||||||||||||||  ||||| |||||||| || |||||||||||||||  | ||  ||||||||| || ||||| ||||||||| |||| ||||||||    
T  17459150 tggttaatcacattattgtttttagtttgttttgaattagttacaagtttgttggagaatagcttat-ttagttagggtttgttacatagcttgtgcttc 17459052  T
Q  291 aagcaacct 299  Q
    |||||||||    
T  17459051 aagcaacct 17459043  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 187 - 297
Target Start/End: Original strand, 41879864 - 41879974
Alignment:
Q  187 ttagttggttaatcacattagagttttagtttgtta-tggattagttacaagtttcctagaatatagcttatatttgttagagtttgttacttagcgtgt 285  Q
    |||||||||||||||||||  | ||||||||||||| | | |||||||||||| |||| |||  |||||||   ||||||| ||||||||||| || |||    
T  41879864 ttagttggttaatcacattt-acttttagtttgttacttggttagttacaagtctccttgaaagtagcttaaggttgttagggtttgttactttgcttgt 41879962  T
Q  286 gcttcaagcaac 297  Q
    ||||||||||||    
T  41879963 gcttcaagcaac 41879974  T

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Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 139 - 293
Target Start/End: Complemental strand, 34224534 - 34224382
Alignment:
Q  139 tgttagttttgtttgttaattcaagttaatcaagtgatgtaatcatacttagttggttaatcacattag-agttttagtttgttatggattagttacaag 237  Q
    |||||||||  |||| |||||||||||  | ||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||| | | |||||||     
T  34224534 tgttagtttgttttgctaattcaagtttgttaagtgatataatcatact-agttggttaatcacattaggagttttagtttgttatgaagttgttacaaa 34224436  T
Q  238 tttcctagaatatagcttatatttgttagagtttgttacttagcgtgtgcttcaag 293  Q
     ||||||  || ||||||||| ||||||||| |||||||||| | |||||||||||    
T  34224435 attcctattatctagcttatagttgttagag-ttgttactta-cttgtgcttcaag 34224382  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 297
Target Start/End: Original strand, 5732999 - 5733111
Alignment:
Q  187 ttagttggttaatcacattagagttt-tagtttgtta-tggattagttacaagtttcctagaatatagcttatatttgttagagtttgttacttagcgtg 284  Q
    |||||||||||||||||||    ||| |||||||||| | | |||||||||||| |||| |||  |||||||   ||||||| ||||||||||| || ||    
T  5732999 ttagttggttaatcacatttacttttatagtttgttacttggttagttacaagtctccttgaaagtagcttaaggttgttagggtttgttactttgcttg 5733098  T
Q  285 tgcttcaagcaac 297  Q
    |||||||||||||    
T  5733099 tgcttcaagcaac 5733111  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 240
Target Start/End: Complemental strand, 20808770 - 20808701
Alignment:
Q  171 agtgatgtaatcatacttagttggttaatcacattagagttttagtttgttatgga-ttagttacaagttt 240  Q
    |||||| |||||||  |||||||||||||||||||  ||||| ||||||||||| | ||||||||||||||    
T  20808770 agtgatataatcatgtttagttggttaatcacatt-tagtttcagtttgttatgaagttagttacaagttt 20808701  T

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Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 171 - 297
Target Start/End: Complemental strand, 1879978 - 1879856
Alignment:
Q  171 agtgatgtaatcatacttagttggttaatcacattagagttttagtttgttatggattagttacaagtttcctagaatatagcttatatttgttagagtt 270  Q
    ||||||||||||||| ||||| |||||||||||||||  ||||||||||||||   ||  |||||||||||||||||| ||||||||  ||||||| |||    
T  1879978 agtgatgtaatcatatttagtaggttaatcacattagt-ttttagtttgttat---ttgattacaagtttcctagaatttagcttatggttgttagggtt 1879883  T
Q  271 tgttacttagcgtgtgcttcaagcaac 297  Q
    |||||||| || ||| |||| ||||||    
T  1879882 tgttactttgcttgtacttcgagcaac 1879856  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 278
Target Start/End: Original strand, 37355573 - 37355695
Alignment:
Q  154 ttaattcaagttaatcaagtgatgtaatcatacttagttggttaatcacattagagttttagtttgttatggat-tagttacaagtttcctagaatatag 252  Q
    |||||||||||| | | ||||||  ||||| ||||||| ||||||||| ||||  | |||||||||||||| |  | |||||||||||| ||||   |||    
T  37355573 ttaattcaagtttacctagtgat--aatcacacttagt-ggttaatcatattattgctttagtttgttatgaaagttgttacaagtttcttagagattag 37355669  T
Q  253 cttatatttgttagagtttgttactt 278  Q
    ||| |||||||||| |||||||||||    
T  37355670 cttgtatttgttagggtttgttactt 37355695  T

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Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 146 - 396
Target Start/End: Complemental strand, 732211 - 731963
Alignment:
Q  146 tttgtttgttaattcaagttaatcaagtgatgtaatcatacttagttggttaatcacattagag-ttttagtttgttatggattagttacaagtttccta 244  Q
    ||||||||||||||||||||  | |||| || ||||||  |||| ||| ||||||||||||||| |||||||||||| | |||| |||||||  | ||||    
T  732211 tttgtttgttaattcaagttgtt-aagtaatctaatcaagcttatttgattaatcacattagagattttagtttgtttttgatttgttacaaagtaccta 732113  T
Q  245 gaatatagcttatatttgttagagtttgttacttagcgtgtgcttcaagcaaccttagcatgtaattgtatataacctacttcacttgtacatttttcat 344  Q
    |||||||||||||| ||||||| | ||||||| || | ||| | ||||| |||| ||||||  | |||||||||| ||||| | | |||| | |||||||    
T  732112 gaatatagcttatagttgttag-ggttgttacataacttgtacctcaagtaacc-tagcatacacttgtatataagctactcctcatgtata-ttttcat 732016  T
Q  345 atcttaata--acacaatacaactacttctattctcaatatactttcattcttc 396  Q
    || | ||||  ||||||| ||| |||||||||||||| ||| ||||| ||||||    
T  732015 atatcaataatacacaat-caaatacttctattctcattattctttctttcttc 731963  T

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