View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19050_low_24 (Length: 376)
Name: NF19050_low_24
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19050_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 7914054 - 7913840
Alignment:
| Q |
20 |
tgttgctgaatctgaactcttcactttcaatttatttgtataggagagaaagatgaatcattaacaagtaacaaccaatgattatgtactgtgattgatg |
119 |
Q |
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| T |
7914054 |
tgttgctgaatctgaactcttcactttcaatttatttgtataggagagaaagatgaatcattaacaagtaacaaccaatgattatgtactgtgattgatg |
7913955 |
T |
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| Q |
120 |
aataattaaaaaccaatgtatttctaattgattgaaaagtgccaagatttactttttattgtgtttgttttatcatcgcataccatagttgtcaattccg |
219 |
Q |
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| T |
7913954 |
aatcattaaaaaccaatgtatttctaattgattgaaaagtgccaagatttactttttattgtgtttgttttatcatcgcataccatagttgtcaattccg |
7913855 |
T |
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| Q |
220 |
aatagcggagcgtcc |
234 |
Q |
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| T |
7913854 |
aatagcggagcgtcc |
7913840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 9867613 - 9867676
Alignment:
| Q |
23 |
tgctgaatctgaactcttcactttcaatttatttgtataggagagaaagatgaatcattaacaa |
86 |
Q |
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| T |
9867613 |
tgcttaatctgaacactttactttgaatttatttgtataggtgagaaagatgaatgattaacaa |
9867676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 9899051 - 9899105
Alignment:
| Q |
23 |
tgctgaatctgaactcttcactttcaatttatttgtataggagagaaagatgaat |
77 |
Q |
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| T |
9899051 |
tgctgaatctgaacactttactttgaatttatttctgtaggtgagaaagatgaat |
9899105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 146
Target Start/End: Original strand, 31239851 - 31239967
Alignment:
| Q |
23 |
tgctgaatctgaactcttcactttcaatttatttgtataggagagaaagatgaatcattaacaagtaacaaccaatgattatgtactgtgattgatgaat |
122 |
Q |
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| T |
31239851 |
tgctgaacctgaactcttcattttcaatttatttctgtacgagagaaagatgaatctt-------taacaacaaatgattatttactgtgattcatgaat |
31239943 |
T |
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| Q |
123 |
aattaaaaaccaatgtatttctaa |
146 |
Q |
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| T |
31239944 |
cattagaaaccaatgcatttctaa |
31239967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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