View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19050_low_28 (Length: 326)
Name: NF19050_low_28
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19050_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 312
Target Start/End: Original strand, 32033005 - 32033303
Alignment:
| Q |
15 |
atgaagacaacaaactacttttatttgatttaaataccaagaagattgtagagcttggtcttaatagagaattcaaaatgggtttttgtcaggttaactt |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
32033005 |
atgaagacaacaaactacttttatttgatttaaataccaagaagattgtagagcttggtcttaatagcgaattcaaaatgggttttcatcaggttaactt |
32033104 |
T |
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| Q |
115 |
ttaca--agaaaagccttcttccaatcaaaaagaataaataattaattattatttgtcccgttttactcatgattgtggttattgacattttacctttcg |
212 |
Q |
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||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32033105 |
ttatataagaaaagccttcttccaatcaaaaagaataaataattaattattatttgtcccgttttactcatgattgtggttattgacgttttacctttcg |
32033204 |
T |
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| Q |
213 |
tagaaagtggcatgtcaattgctaatatcaaaattatttatcatcaagtatttgaaagacacattctagttgcctaggccatttgctttccttttttatg |
312 |
Q |
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| T |
32033205 |
tag-aagtggcatgtcaattgctaatatcaaaattatttattatcaagtatttgaaagacacattctagttgcctaggccatttgctttccttttttatg |
32033303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 15 - 312
Target Start/End: Original strand, 31789656 - 31789947
Alignment:
| Q |
15 |
atgaagacaacaaactacttttatttgatttaaataccaagaagattgtagagcttggtcttaatagagaattcaaaatgggtttttgtcaggttaactt |
114 |
Q |
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| T |
31789656 |
atgaagacaacaaactacttttatttgatttaaataccaagaagattgcagagcttggtcttaatagagaagacaaaatgggttttcatcaggttaactt |
31789755 |
T |
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| Q |
115 |
ttacaagaaaagccttcttccaatcaaaaagaataaataattaattattatttgtcccgttttactcatgattgtggttattgacattttacctttcgta |
214 |
Q |
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| T |
31789756 |
ttacaagaaaagccttcttccaatc-aaaataataaataattaattattatttgtcccgttttactcatgattgtggttattgacattttacctttcgta |
31789854 |
T |
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| Q |
215 |
gaaagtggcatgtcaattgctaatatcaaaattatttatcatcaagtatttgaaagacacattctagttgcctaggccatttgctttccttttttatg |
312 |
Q |
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| T |
31789855 |
g-aagtggcatgtcagttgctaatatcaaaattatt----atcaagtatttgaaagacacattcttgttgcctaggccttttgctttccttttttatg |
31789947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 173 - 306
Target Start/End: Original strand, 40545405 - 40545533
Alignment:
| Q |
173 |
gttttactcatgattgtggttattgacattttacctttcgtagaaagtggcatg-tcaattgctaatatcaaaattatttatcatcaagtatttgaaaga |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
40545405 |
gttttactcatgattgtggttattgacattttaccttttatagaaagtgg--tgatcaattgctaatatcaaaactatt----atcaagtatttgaaaga |
40545498 |
T |
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| Q |
272 |
cacattctagttgcctaggccatttgctttccttt |
306 |
Q |
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| T |
40545499 |
cactttctagttgactaggccatttgctttccttt |
40545533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 40545254 - 40545314
Alignment:
| Q |
18 |
aagacaacaaactacttttatttgatttaaataccaagaagattgtagagcttggtcttaa |
78 |
Q |
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|||||||| |||||||||| ||||||||||||||||||||||| || ||||||||| |||| |
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| T |
40545254 |
aagacaacgaactacttttgtttgatttaaataccaagaagatcgtcgagcttggtattaa |
40545314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 5162586 - 5162764
Alignment:
| Q |
15 |
atgaagacaacaaactacttttatttgatttaaataccaagaagattgtagagcttggtcttaatagagaattcaaaatgggtttttgtcaggttaactt |
114 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||| | | | | | || | || ||||| |||| | |
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| T |
5162586 |
atgacgacaacaaactacttttgtttgatttaaataccaacaagattgttgagcttggacttaaaataagagatagattgactcttggtcagattaaagt |
5162685 |
T |
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| Q |
115 |
ttacaagaaaagccttcttccaatcaaaaagaataaataattaattattatttgtcccgttttactcatgattgtggttattga |
198 |
Q |
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| T |
5162686 |
ttacaagaaaagccttcttccaatc-aaaagaata---aattaattatta-ctgtcccgttttactcatgattatggttattga |
5162764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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