View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19050_low_36 (Length: 292)
Name: NF19050_low_36
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19050_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 3191599 - 3191329
Alignment:
| Q |
19 |
gaaggtaagagtgccatgagaaggttgtttctattaatgataaagggaacaactctaacttatggaactcgttttggttccctcaatgcactaggttgtg |
118 |
Q |
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| T |
3191599 |
gaaggtaagagtgccatgagaaagttgtttctattaatgataaagg-aacaactctaacttatggaactcgttttggttccctcaatgcacttggttgtg |
3191501 |
T |
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| Q |
119 |
aatatactgatatgatccattgtagatttataacctatgtggagaggcatcattccatccatccattttggatatgacttgctatacacaggcatatcca |
218 |
Q |
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| T |
3191500 |
aatatactgatatgatccattgtagatttataacctatgtggagaggcaccattccatccatccattttggatatgacttgctatacacaggcatatcca |
3191401 |
T |
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| Q |
219 |
tgagtttccgttgtatcccacactacctcttggttatattggatattagtttgactcacctttgcttctcca |
290 |
Q |
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| T |
3191400 |
tgagtttcagttgtatcccacactacctcttggttatattggatattagtttgactcaccattgtttctcca |
3191329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 3213479 - 3213255
Alignment:
| Q |
19 |
gaaggtaagagtgccatgagaaggttgtttctattaatgataaagggaacaactctaacttatggaactcgttttggttccc-tcaatgcactaggttgt |
117 |
Q |
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| T |
3213479 |
gaaggaaagagtatcatgagaaggctgttcctattaacgataaagggaacaactccaacttatggaacctgtgttggttcccctcaatgcactaggttgt |
3213380 |
T |
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| Q |
118 |
gaatatactgatatgatccattgtagatttataacctatgtggagaggcatcattccatccatccattttggatatgacttgctatacacaggcatatcc |
217 |
Q |
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| T |
3213379 |
gaatataccgatatgatccattgtcgatttataacctattgagaaagg-aacattctatccatccattttggatatgacttgctatacacaagcatatcc |
3213281 |
T |
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| Q |
218 |
atgagtttccgttgtatcccacacta |
243 |
Q |
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| T |
3213280 |
atgggtttcagttgtatcccaaacta |
3213255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 43 - 289
Target Start/End: Complemental strand, 3208481 - 3208242
Alignment:
| Q |
43 |
ttgtttctattaatgataaagggaacaactctaacttatggaactcgttttggttccctc-aatgcactaggttgtgaatatactgatatgatccattgt |
141 |
Q |
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| T |
3208481 |
ttgtttctattagtgataaggagaacaagtccaacttatggaactcgttttggttccccccaatgcactaggttgtgaatatactaatatgatccagtat |
3208382 |
T |
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| Q |
142 |
agatttataacctatgtggagaggcatcattccatccatccattttggatatgacttgctatacacaggcatatccatgagtttccgttgtatcccacac |
241 |
Q |
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| T |
3208381 |
cgatttataactcatgtggagaggcaccattctatccatccattttggatatgacttgctatatatatgcatatccatgggt--------tatcctaaac |
3208290 |
T |
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| Q |
242 |
tacctcttggttatattggatattagtttgactcacctttgcttctcc |
289 |
Q |
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| T |
3208289 |
tacctcttgattgtattggacatgagtttgactcaccattgtttctcc |
3208242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 3211792 - 3211742
Alignment:
| Q |
240 |
actacctcttggttatattggatattagtttgactcacctttgcttctcca |
290 |
Q |
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| T |
3211792 |
actacctcttgattatattggatatgagtttaactcaccattgtttctcca |
3211742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 9511209 - 9511150
Alignment:
| Q |
201 |
tatacacaggcatatccatgagtttccgttgtatcccacactacctcttggttatattgg |
260 |
Q |
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| T |
9511209 |
tatacacatgcctatccactaatttccgttgtatcccaaactacctcttgattatattgg |
9511150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 34184892 - 34184824
Alignment:
| Q |
32 |
ccatgagaaggttgtttctattaatgataaagggaacaactctaacttatggaactcgttttggttccc |
100 |
Q |
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| T |
34184892 |
ccatgagaaggtcgttcctatccatgataaagggaatagttgcaacttatggaactcgttctggttccc |
34184824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 15221786 - 15221834
Alignment:
| Q |
188 |
ggatatgacttgctatacacaggcatatccatgagtttccgttgtatcc |
236 |
Q |
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| T |
15221786 |
ggatatgacttcctatacattggcatatccatgggtttcagttgtatcc |
15221834 |
T |
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