View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19050_low_41 (Length: 271)
Name: NF19050_low_41
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19050_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 3191364 - 3191144
Alignment:
| Q |
1 |
tattggatattagtttgactcaccattgtttctccattgagtcgcttgagctaacttcgtgttatattgatgaagttgattgatgatccatgtatgttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3191364 |
tattggatattagtttgactcaccattgtttctccattgagtcgcttgagctaacttcgtgttatattgatgaagttgattgatgatccatggatgttta |
3191265 |
T |
|
| Q |
101 |
gcaatataactccttgttaactaaggtatcatcaaattcatcgggagatggtgtagatacatcaggttgtggcatgtatgttatatcatcaggttgaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3191264 |
gcaatataactccttgttaactaaggtatcatcaaattcatcgggagatggtgtagatacatcaggttgtggcatgtatgttatatcatcaggttgaaga |
3191165 |
T |
|
| Q |
201 |
tgatagttgctttatattgtt |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
3191164 |
tgatagttgctttatattgtt |
3191144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 3208276 - 3208056
Alignment:
| Q |
1 |
tattggatattagtttgactcaccattgtttctccattgagtcgcttgagctaacttcgtgttatattgatgaagttgattgatgatccatgtatgttta |
100 |
Q |
| |
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||||||| || |||||||||||||||||||||||| || |||| |||||||||||| |||||||||||||||||| |||| |||||||||| ||||||| |
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| T |
3208276 |
tattggacatgagtttgactcaccattgtttctccgttaagtcaattgagctaacttggtgttatattgatgaagtggattcatgatccatggatgttta |
3208177 |
T |
|
| Q |
101 |
gcaatataactccttgttaactaaggtatcatcaaattcatcgggagatggtgtagatacatcaggttgtggcatgtatgttatatcatcaggttgaaga |
200 |
Q |
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| T |
3208176 |
gcaatataacaacttgttaactaaggtatcatcaaattcatcgggagatggtgtagatacatcaggttgtggcatgtatgttatatcatcaggttgatga |
3208077 |
T |
|
| Q |
201 |
tgatagttgctttatattgtt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
3208076 |
tgatagttgctttatattgtt |
3208056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 3211777 - 3211552
Alignment:
| Q |
1 |
tattggatattagtttgactcaccattgtttctccattgagtcgcttgagctaacttcgtgttatattgatgaagttgattgatgatccatgtatgttta |
100 |
Q |
| |
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|||||||||| ||||| ||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||| |||| |||||||||| ||||||| |
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| T |
3211777 |
tattggatatgagtttaactcaccattgtttctccattgagttgcttgagataactttgtgttatattgatgaagtggattcatgatccatggatgttta |
3211678 |
T |
|
| Q |
101 |
gcaatataactccttgttaactaaggtatcatcaaattcatc-----gggagatggtgtagatacatcaggttgtggcatgtatgttatatcatcaggtt |
195 |
Q |
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| |||||||||||||||||||||||||| ||||||||||| | ||||||| | |||||||||||||||||||||||||||||| |||| | | |
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| T |
3211677 |
ccggtataactccttgttaactaaggtatcgtcaaattcatcctcatccgggatggtgcaaatacatcaggttgtggcatgtatgttatatgatcaagct |
3211578 |
T |
|
| Q |
196 |
gaagatgatagttgctttatattgtt |
221 |
Q |
| |
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|| ||||||||||| ||||||||||| |
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| T |
3211577 |
gatgatgatagttggtttatattgtt |
3211552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 220 - 255
Target Start/End: Complemental strand, 3207992 - 3207957
Alignment:
| Q |
220 |
ttcaatggtaaaggttgtattgtcccactgagcgtg |
255 |
Q |
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| T |
3207992 |
ttcaatggtaaaggttgtattgtcccactgagcgtg |
3207957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 255
Target Start/End: Complemental strand, 3191080 - 3191045
Alignment:
| Q |
220 |
ttcaatggtaaaggttgtattgtcccactgagcgtg |
255 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
3191080 |
ttcaatggtaaaggttgtattgtcccactgaacgtg |
3191045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 17906707 - 17906655
Alignment:
| Q |
28 |
gtttctccattgagtcgcttgagctaacttcgtgttatattgatgaagttgat |
80 |
Q |
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||||||||||||||||| ||||| |||| | |||||||||||||||||||| |
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| T |
17906707 |
gtttctccattgagtcgtttgagataacagagggttatattgatgaagttgat |
17906655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 118768 - 118796
Alignment:
| Q |
220 |
ttcaatggtaaaggttgtattgtcccact |
248 |
Q |
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| T |
118768 |
ttcaatggtaaaggttgtattgtcccact |
118796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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