View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19050_low_44 (Length: 261)

Name: NF19050_low_44
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19050_low_44
NF19050_low_44
[»] chr4 (20 HSPs)
chr4 (12-233)||(50100010-50100239)
chr4 (186-234)||(2017366-2017414)
chr4 (186-233)||(32006023-32006070)
chr4 (155-233)||(4552325-4552402)
chr4 (186-234)||(10058655-10058703)
chr4 (186-234)||(31364253-31364301)
chr4 (186-233)||(46645743-46645790)
chr4 (186-233)||(52373894-52373941)
chr4 (186-230)||(41972371-41972415)
chr4 (186-233)||(2521827-2521874)
chr4 (186-233)||(10715796-10715843)
chr4 (186-233)||(10929566-10929613)
chr4 (186-233)||(25237728-25237775)
chr4 (186-230)||(4728701-4728745)
chr4 (187-235)||(9003693-9003741)
chr4 (187-234)||(11826978-11827025)
chr4 (187-233)||(1585809-1585855)
chr4 (186-230)||(40969367-40969411)
chr4 (186-233)||(43003113-43003160)
chr4 (187-233)||(14044464-14044510)
[»] scaffold0075 (2 HSPs)
scaffold0075 (186-233)||(11663-11710)
scaffold0075 (186-233)||(7050-7096)
[»] chr6 (16 HSPs)
chr6 (186-233)||(2941362-2941409)
chr6 (155-234)||(1780942-1781020)
chr6 (153-232)||(10397706-10397784)
chr6 (186-233)||(9696195-9696242)
chr6 (186-233)||(15529086-15529133)
chr6 (186-233)||(23663688-23663735)
chr6 (186-233)||(34248942-34248989)
chr6 (156-230)||(15122186-15122259)
chr6 (187-230)||(28614334-28614377)
chr6 (187-230)||(31188242-31188285)
chr6 (197-233)||(2836107-2836143)
chr6 (155-233)||(9046814-9046891)
chr6 (194-230)||(31200094-31200130)
chr6 (186-233)||(339478-339525)
chr6 (187-233)||(2960812-2960858)
chr6 (187-233)||(14938852-14938898)
[»] chr5 (22 HSPs)
chr5 (186-233)||(2476504-2476551)
chr5 (187-233)||(34444105-34444151)
chr5 (155-234)||(33007024-33007102)
chr5 (186-234)||(34846484-34846532)
chr5 (186-233)||(15675452-15675499)
chr5 (187-233)||(13942683-13942729)
chr5 (187-233)||(32953598-32953644)
chr5 (186-233)||(14832740-14832787)
chr5 (186-233)||(15504088-15504135)
chr5 (186-233)||(35469042-35469089)
chr5 (186-230)||(12267312-12267356)
chr5 (187-230)||(1672417-1672460)
chr5 (186-233)||(6900906-6900953)
chr5 (187-233)||(7162014-7162060)
chr5 (187-233)||(16567930-16567976)
chr5 (187-233)||(37552053-37552099)
chr5 (187-233)||(37654883-37654929)
chr5 (186-231)||(36234484-36234529)
chr5 (186-233)||(21069160-21069207)
chr5 (187-233)||(37779782-37779828)
chr5 (186-230)||(767440-767484)
chr5 (186-230)||(30249107-30249151)
[»] chr1 (16 HSPs)
chr1 (186-233)||(25007603-25007650)
chr1 (186-233)||(37153919-37153966)
chr1 (187-233)||(44305551-44305597)
chr1 (186-234)||(8239410-8239458)
chr1 (186-234)||(33468900-33468948)
chr1 (187-233)||(14727469-14727515)
chr1 (155-234)||(31844540-31844618)
chr1 (155-234)||(34459259-34459337)
chr1 (186-230)||(1428348-1428392)
chr1 (189-233)||(4641969-4642013)
chr1 (186-234)||(6331803-6331851)
chr1 (186-233)||(27460818-27460865)
chr1 (186-235)||(9527194-9527243)
chr1 (186-233)||(49898527-49898574)
chr1 (187-231)||(4774113-4774157)
chr1 (187-223)||(25011467-25011503)
[»] chr3 (16 HSPs)
chr3 (155-234)||(26370941-26371019)
chr3 (155-233)||(28311422-28311499)
chr3 (186-234)||(37516765-37516813)
chr3 (186-233)||(41218284-41218331)
chr3 (155-234)||(25391744-25391822)
chr3 (186-233)||(7501101-7501148)
chr3 (186-233)||(14461210-14461257)
chr3 (186-233)||(44047729-44047776)
chr3 (186-230)||(33179021-33179065)
chr3 (186-233)||(53652043-53652090)
chr3 (186-233)||(53987976-53988023)
chr3 (188-233)||(43700124-43700169)
chr3 (189-233)||(9600462-9600506)
chr3 (186-233)||(12909973-12910018)
chr3 (187-234)||(26278474-26278521)
chr3 (187-233)||(41358549-41358595)
[»] chr8 (9 HSPs)
chr8 (155-233)||(35384264-35384341)
chr8 (186-233)||(3383948-3383995)
chr8 (186-231)||(36406418-36406463)
chr8 (186-233)||(34282789-34282836)
chr8 (187-230)||(27321792-27321835)
chr8 (187-233)||(38214865-38214911)
chr8 (186-230)||(28928202-28928246)
chr8 (186-233)||(24965151-24965198)
chr8 (186-234)||(31500742-31500790)
[»] chr2 (14 HSPs)
chr2 (186-233)||(41010652-41010699)
chr2 (187-233)||(2475946-2475992)
chr2 (186-235)||(22572650-22572699)
chr2 (155-233)||(29257506-29257583)
chr2 (155-233)||(41114768-41114845)
chr2 (186-233)||(17148936-17148983)
chr2 (186-233)||(18299071-18299118)
chr2 (186-233)||(6799814-6799861)
chr2 (186-233)||(17249470-17249517)
chr2 (186-233)||(45444382-45444429)
chr2 (186-230)||(13203910-13203954)
chr2 (186-233)||(25563112-25563159)
chr2 (187-233)||(304021-304067)
chr2 (186-230)||(15651384-15651428)
[»] chr7 (15 HSPs)
chr7 (186-231)||(26722888-26722933)
chr7 (186-233)||(4843459-4843506)
chr7 (186-233)||(35300357-35300404)
chr7 (187-233)||(22206616-22206662)
chr7 (187-233)||(22228077-22228123)
chr7 (186-230)||(42439491-42439535)
chr7 (187-233)||(3012461-3012507)
chr7 (187-233)||(28693933-28693979)
chr7 (187-233)||(30852449-30852495)
chr7 (187-231)||(5991350-5991394)
chr7 (186-226)||(41759556-41759596)
chr7 (187-230)||(814903-814946)
chr7 (186-233)||(21932671-21932718)
chr7 (186-233)||(38128910-38128957)
chr7 (187-233)||(7873150-7873196)
[»] scaffold0618 (1 HSPs)
scaffold0618 (155-233)||(1835-1912)
[»] scaffold0638 (1 HSPs)
scaffold0638 (187-234)||(4216-4263)
[»] scaffold0021 (1 HSPs)
scaffold0021 (186-233)||(109233-109280)


Alignment Details
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 50100239 - 50100010
Alignment:
Q  12 ataatactcatctgaagttgtgtcggtaaaagatttgctcgatcaacataaatatagtattataacttcataattgcttggtgatatgtcaaattgtgca 111  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50100239 ataatattcatctgaagttgtgtcggtaaaagatttgctcgatcaaaataaatatagtattataacttcataattgcttggtgatatgtcaaattgtgca 50100140  T
Q  112 aactactaaacttgaccatcaagtt----gaaatcatttgtttgaaa--------ccaggaattttatagagtttgggcnnnnnnntttatcgcaaaacg 199  Q
    |||||||||||||||||||||||||    ||||||||||||||||||         ||||||||   |||||||||||        ||||||||||||||    
T  50100139 aactactaaacttgaccatcaagttgaacgaaatcatttgtttgaaattaggttgtcaggaatt---tagagtttggg-taaaaaatttatcgcaaaacg 50100044  T
Q  200 ttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||||||||||||||||||||||||||    
T  50100043 ttacttccttcctacgaataatttcacatttcct 50100010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 2017366 - 2017414
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttccta 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2017366 tttatcgcaaaacgttacttccttcctacgaataatttcacatttccta 2017414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 32006070 - 32006023
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32006070 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 32006023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 4552402 - 4552325
Alignment:
Q  155 ccaggaattttatagagtttgggcnnnnnnntttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    |||||||||||||||||| |||||       ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4552402 ccaggaattttatagagtctgggcaaaaaa-tttatcgcaaaacgttacttccttcctacaaataatttcacatttcct 4552325  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 10058703 - 10058655
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttccta 234  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10058703 tttatcgcaaaacgttacttccttcctgcgaataatttcacatttccta 10058655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 31364301 - 31364253
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttccta 234  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31364301 tttatcgcaaaacgttacttccttcctgcgaataatttcacatttccta 31364253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 46645790 - 46645743
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  46645790 tttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 46645743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 52373941 - 52373894
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  52373941 tttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 52373894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 41972371 - 41972415
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacattt 230  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  41972371 tttatcgcaaaacgttacttccttcctgcgaataatttcacattt 41972415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 2521827 - 2521874
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  2521827 tttatcgtaaaacgttacttccttcctgcgaataatttcacatttcct 2521874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 10715843 - 10715796
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  10715843 tttatcgcaaaacattacttccttcctgcgaataatttcacatttcct 10715796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 10929613 - 10929566
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  10929613 tttatcgcaaaacattacttccttcctgcgaataatttcacatttcct 10929566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 25237775 - 25237728
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||    
T  25237775 tttatcacaaaacgttacttccttcctgcgaataatttcacatttcct 25237728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 4728745 - 4728701
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacattt 230  Q
    ||||||||||||||||||||||||||| | |||||||||||||||    
T  4728745 tttatcgcaaaacgttacttccttcctgcaaataatttcacattt 4728701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 9003741 - 9003693
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcctat 235  Q
    ||||||||||| |||||||||||| | ||||||||||||||||||||||    
T  9003741 ttatcgcaaaatgttacttccttcttgcgaataatttcacatttcctat 9003693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 11826978 - 11827025
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacatttccta 234  Q
    |||||| |||| |||||||||||||| |||||||||||||||||||||    
T  11826978 ttatcgtaaaatgttacttccttcctgcgaataatttcacatttccta 11827025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 1585855 - 1585809
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||||||| ||| |||| ||||||||||||||||||||||    
T  1585855 ttatcgcaaaacgttgctttcttcgtacgaataatttcacatttcct 1585809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 40969411 - 40969367
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacattt 230  Q
    |||||||||||||||||||||||| || |||||||||||| ||||    
T  40969411 tttatcgcaaaacgttacttcctttctgcgaataatttcatattt 40969367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 43003113 - 43003160
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||| ||| ||||||||||| ||||| ||||||||||||||||||||    
T  43003113 tttattgcagaacgttacttctttcctgcgaataatttcacatttcct 43003160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 14044510 - 14044464
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||| ||||| ||||||||  |||||||||||||||||||    
T  14044510 ttatcgcaaaatgttacctccttcctgagaataatttcacatttcct 14044464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 11710 - 11663
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11710 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 11663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 7096 - 7050
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||    
T  7096 tttatcgcaaa-cgttacttccttcctacgaataattttacatttcct 7050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 2941409 - 2941362
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2941409 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 2941362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 1780942 - 1781020
Alignment:
Q  155 ccaggaattttatagagtttgggcnnnnnnntttatcgcaaaacgttacttccttcctacgaataatttcacatttccta 234  Q
    |||||||||||||||||| |||||       ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1780942 ccaggaattttatagagtctgggcataaaa-tttatcgcaaaacgttacttccttcctgcgaataatttcacatttccta 1781020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 10397706 - 10397784
Alignment:
Q  153 aaccaggaattttatagagtttgggcnnnnnnntttatcgcaaaacgttacttccttcctacgaataatttcacatttcc 232  Q
    |||||||||||||||||||| |||||       ||||||||||||||||||||||||||| |||||||||||||||||||    
T  10397706 aaccaggaattttatagagtctgggcaaaaaa-tttatcgcaaaacgttacttccttcctgcgaataatttcacatttcc 10397784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 9696242 - 9696195
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9696242 tttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 9696195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 15529133 - 15529086
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  15529133 tttatcgcaaaacattacttctttcctacgaataatttcacatttcct 15529086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 23663688 - 23663735
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  23663688 tttatcgcaaaacgttacttcattcctgcgaataatttcacatttcct 23663735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 34248942 - 34248989
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||    
T  34248942 tttatcgcaaaacgttacttccttcctgcggataatttcacatttcct 34248989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 230
Target Start/End: Complemental strand, 15122259 - 15122186
Alignment:
Q  156 caggaattttatagagtttgggcnnnnnnntttatcgcaaaacgttacttccttcctacgaataatttcacattt 230  Q
    |||||||||||||||||||||||       |||||||||||||||||||| ||| || |||||||||||||||||    
T  15122259 caggaattttatagagtttgggcaaaaaa-tttatcgcaaaacgttactttctttctgcgaataatttcacattt 15122186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 28614334 - 28614377
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacattt 230  Q
    ||||||||||| |||||||||||||| |||||||||||||||||    
T  28614334 ttatcgcaaaatgttacttccttcctgcgaataatttcacattt 28614377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 31188242 - 31188285
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacattt 230  Q
    ||||||||||||||||||||||||||  ||||||||||||||||    
T  31188242 ttatcgcaaaacgttacttccttcctgtgaataatttcacattt 31188285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 2836107 - 2836143
Alignment:
Q  197 acgttacttccttcctacgaataatttcacatttcct 233  Q
    |||||||||||||||| ||||||||||||||||||||    
T  2836107 acgttacttccttcctgcgaataatttcacatttcct 2836143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 233
Target Start/End: Original strand, 9046814 - 9046891
Alignment:
Q  155 ccaggaattttatagagtttgggcnnnnnnntttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    |||| |||||||||||||||||||       ||||||| ||||||||| |||||||||  |||||||||||||||||||    
T  9046814 ccagaaattttatagagtttgggcaaaaaa-tttatcggaaaacgttatttccttcctttgaataatttcacatttcct 9046891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 31200094 - 31200130
Alignment:
Q  194 aaaacgttacttccttcctacgaataatttcacattt 230  Q
    ||||||||||||||||||| |||||||||||||||||    
T  31200094 aaaacgttacttccttcctgcgaataatttcacattt 31200130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 339525 - 339478
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    |||||||||||| |||||||||||||| | | ||||||||||||||||    
T  339525 tttatcgcaaaatgttacttccttcctgcaattaatttcacatttcct 339478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 2960858 - 2960812
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    |||| |||||| |||||||||||| | ||||||||||||||||||||    
T  2960858 ttattgcaaaatgttacttccttcttgcgaataatttcacatttcct 2960812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 14938852 - 14938898
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||| ||||||| ||||||  |||||||||||||||||||    
T  14938852 ttatcgcaaaatgttactttcttcctgggaataatttcacatttcct 14938898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 2476551 - 2476504
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2476551 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 2476504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 34444151 - 34444105
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  34444151 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 34444105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 33007102 - 33007024
Alignment:
Q  155 ccaggaattttatagagtttgggcnnnnnnntttatcgcaaaacgttacttccttcctacgaataatttcacatttccta 234  Q
    |||||||||||||||||| |||||       ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33007102 ccaggaattttatagagtctgggcaaaaaa-tttatcgcaaaacgttacttccttcctgcgaataatttcacatttccta 33007024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 34846532 - 34846484
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttccta 234  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34846532 tttatcgcaaaacgttacttccttcctgcgaataatttcacatttccta 34846484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 15675499 - 15675452
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  15675499 tttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 15675452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 13942683 - 13942729
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  13942683 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 13942729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 32953598 - 32953644
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  32953598 ttatcgcaaaatgttacttccttcctacgaataatttcacatttcct 32953644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 14832740 - 14832787
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  14832740 tttatcgcaaaacattacttccttcctgcgaataatttcacatttcct 14832787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 15504135 - 15504088
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||    
T  15504135 tttatcgcaaaatgttacttccttcctgcgaataatttcacatttcct 15504088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 35469089 - 35469042
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||    
T  35469089 tttatcgcaaaatgttacttccttcctgcgaataatttcacatttcct 35469042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 12267312 - 12267356
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacattt 230  Q
    |||||||||||||||||||||||||||  ||||||||||||||||    
T  12267312 tttatcgcaaaacgttacttccttcctgtgaataatttcacattt 12267356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 1672417 - 1672460
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacattt 230  Q
    ||||||||||| |||||||||||||| |||||||||||||||||    
T  1672417 ttatcgcaaaatgttacttccttcctgcgaataatttcacattt 1672460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 6900953 - 6900906
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    |||||||||||| |||||||||||| | ||||||||||||||||||||    
T  6900953 tttatcgcaaaatgttacttccttcatgcgaataatttcacatttcct 6900906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 7162014 - 7162060
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||| |||||||||||||| | ||||||||||||||||||    
T  7162014 ttatcgcaaaatgttacttccttcctgcaaataatttcacatttcct 7162060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 16567976 - 16567930
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||| ||||||||||||||  |||||||||||||||||||    
T  16567976 ttatcgcaaaatgttacttccttcctgggaataatttcacatttcct 16567930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 37552099 - 37552053
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||||    
T  37552099 ttattgcaaaatgttacttccttcctgcgaataatttcacatttcct 37552053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 37654929 - 37654883
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||||    
T  37654929 ttattgcaaaatgttacttccttcctgcgaataatttcacatttcct 37654883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 36234484 - 36234529
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttc 231  Q
    |||||||||||| |||||||||||| | ||||||||||||||||||    
T  36234484 tttatcgcaaaatgttacttccttcttgcgaataatttcacatttc 36234529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 21069207 - 21069160
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||||||||| |||||||||   ||||||||||||||||||    
T  21069207 tttatcgcaaaacgttatttccttcctggaaataatttcacatttcct 21069160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 37779828 - 37779782
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    |||||| |||| |||||||||||||  ||||||||||||||||||||    
T  37779828 ttatcgtaaaatgttacttccttccagcgaataatttcacatttcct 37779782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 767484 - 767440
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacattt 230  Q
    ||||| |||||||||||||| |||||| ||||||||||| |||||    
T  767484 tttattgcaaaacgttactttcttcctgcgaataatttctcattt 767440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 30249151 - 30249107
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacattt 230  Q
    |||||||||||||||| ||| |||||| | |||||||||||||||    
T  30249151 tttatcgcaaaacgttgctttcttcctgcaaataatttcacattt 30249107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 25007650 - 25007603
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25007650 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 25007603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 37153919 - 37153966
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37153919 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 37153966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 44305597 - 44305551
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  44305597 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 44305551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 8239458 - 8239410
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttccta 234  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8239458 tttatcgcaaaacgttacttccttcctatgaataatttcacatttccta 8239410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 33468900 - 33468948
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttccta 234  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33468900 tttatcgcaaaacgttacttccttcctgcgaataatttcacatttccta 33468948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 14727515 - 14727469
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  14727515 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 14727469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 31844540 - 31844618
Alignment:
Q  155 ccaggaattttatagagtttgggcnnnnnnntttatcgcaaaacgttacttccttcctacgaataatttcacatttccta 234  Q
    |||||||||||||||||| |||||       |||||||||||| |||||||||||||| |||||||||||||||||||||    
T  31844540 ccaggaattttatagagtctgggcaaaaaa-tttatcgcaaaatgttacttccttcctgcgaataatttcacatttccta 31844618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 34459337 - 34459259
Alignment:
Q  155 ccaggaattttatagagtttgggcnnnnnnntttatcgcaaaacgttacttccttcctacgaataatttcacatttccta 234  Q
    |||||||||||||||||| |||||       |||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  34459337 ccaggaattttatagagtctgggcaaaaaa-tttatcacaaaacgttacttccttcccacgaataatttcacatttccta 34459259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 1428348 - 1428392
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacattt 230  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  1428348 tttaccgcaaaacgttacttccttcctacgaataatttcacattt 1428392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 4641969 - 4642013
Alignment:
Q  189 atcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  4641969 atcgcaaaacgttacttccttcctgcgaataatttcacatttcct 4642013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 6331851 - 6331803
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttccta 234  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||    
T  6331851 tttatcgcaaaacgttacttccttccttcaaataatttcacatttccta 6331803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 27460865 - 27460818
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  27460865 tttatcgcaaaacattacttccttcctgcgaataatttcacatttcct 27460818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 9527243 - 9527194
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcctat 235  Q
    |||||||||||||||||||  |||||| ||||||||||||||||||||||    
T  9527243 tttatcgcaaaacgttactgtcttcctgcgaataatttcacatttcctat 9527194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 49898574 - 49898527
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    |||||||||||| ||||| |||||||| ||||||||||||||||||||    
T  49898574 tttatcgcaaaatgttacgtccttcctgcgaataatttcacatttcct 49898527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 4774157 - 4774113
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacatttc 231  Q
    ||||||||||| ||||||| |||||| ||||||||||||||||||    
T  4774157 ttatcgcaaaatgttactttcttcctgcgaataatttcacatttc 4774113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 25011467 - 25011503
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataattt 223  Q
    |||||||||||||||||||||||| | ||||||||||    
T  25011467 ttatcgcaaaacgttacttccttcatgcgaataattt 25011503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 26370941 - 26371019
Alignment:
Q  155 ccaggaattttatagagtttgggcnnnnnnntttatcgcaaaacgttacttccttcctacgaataatttcacatttccta 234  Q
    |||||||||||||||||| |||||       ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26370941 ccaggaattttatagagtctgggcaaaaaa-tttatcgcaaaacgttacttccttcctgcgaataatttcacatttccta 26371019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 28311499 - 28311422
Alignment:
Q  155 ccaggaattttatagagtttgggcnnnnnnntttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    |||||||||||||||||| |||||       ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28311499 ccaggaattttatagagtctgggcaaaaaa-tttatcgcaaaacattacttccttcctacgaataatttcacatttcct 28311422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 37516813 - 37516765
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttccta 234  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37516813 tttatcgcaaaacgttacttccttcctgcgaataatttcacatttccta 37516765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 41218284 - 41218331
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41218284 tttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 41218331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 25391744 - 25391822
Alignment:
Q  155 ccaggaattttatagagtttgggcnnnnnnntttatcgcaaaacgttacttccttcctacgaataatttcacatttccta 234  Q
    ||||||||||||||||| ||||||       ||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  25391744 ccaggaattttatagagcttgggcaaaaaa-tttatcgcaaaacattacttccttcttacgaataatttcacatttccta 25391822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 7501148 - 7501101
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||    
T  7501148 tttatcgcaaaacgttacttacttcctgcgaataatttcacatttcct 7501101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 14461257 - 14461210
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||    
T  14461257 tttatcacaaaacgttacttccttcctacgaataattttacatttcct 14461210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 44047776 - 44047729
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  44047776 tttatcgcaaaacgttacttctttcctacaaataatttcacatttcct 44047729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 33179021 - 33179065
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacattt 230  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||    
T  33179021 tttatcgcaaaacgttacttcattcctgcgaataatttcacattt 33179065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 53652090 - 53652043
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||||| |||| | |||||||||||||||||||||||||||    
T  53652090 tttatcgcaaaacattacgttcttcctacgaataatttcacatttcct 53652043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 53988023 - 53987976
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||| |||||| |||||||||||||| ||||||||||||||||||||    
T  53988023 tttattgcaaaatgttacttccttcctgcgaataatttcacatttcct 53987976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 43700124 - 43700169
Alignment:
Q  188 tatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||||||||||| || || ||||||||||||||||||||    
T  43700124 tatcgcaaaacgttacttcttttctgcgaataatttcacatttcct 43700169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 9600506 - 9600462
Alignment:
Q  189 atcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    |||| |||| ||||||||||||||||||||||||||| |||||||    
T  9600506 atcgtaaaatgttacttccttcctacgaataatttcatatttcct 9600462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 12910018 - 12909973
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  12910018 tttatcgcaaatcgttacttccttcc--cgaataatttcacatttcct 12909973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 26278521 - 26278474
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacatttccta 234  Q
    ||||||||||| | |||||||||| | |||||||||||||||||||||    
T  26278521 ttatcgcaaaatgatacttccttcttgcgaataatttcacatttccta 26278474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 41358549 - 41358595
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    |||||||||||||||| ||||||||| || |||||| ||||||||||    
T  41358549 ttatcgcaaaacgttatttccttcctgcggataattgcacatttcct 41358595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 233
Target Start/End: Original strand, 35384264 - 35384341
Alignment:
Q  155 ccaggaattttatagagtttgggcnnnnnnntttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||||||||| ||||||       |||||||||||||| |||||||||||||||||||||||||||||||||    
T  35384264 ccaggaattttatagagcttgggcaaaaaa-tttatcgcaaaacggtacttccttcctacgaataatttcacatttcct 35384341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 3383948 - 3383995
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3383948 tttatcgcaaaacgttacttccttcctacgaataatttcacgtttcct 3383995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 36406418 - 36406463
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttc 231  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  36406418 tttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 36406463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 34282789 - 34282836
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  34282789 tttatcgcacaacgttacttccttcctgcgaataatttcacatttcct 34282836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 27321792 - 27321835
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacattt 230  Q
    ||||||||||| |||||||||||||| |||||||||||||||||    
T  27321792 ttatcgcaaaatgttacttccttcctgcgaataatttcacattt 27321835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 38214911 - 38214865
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||| |||||||| ||||| ||||||||||||||||||||    
T  38214911 ttatcgcaaaatgttacttcattcctgcgaataatttcacatttcct 38214865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 28928246 - 28928202
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacattt 230  Q
    ||||||| |||| |||||||||||||| |||||||||||||||||    
T  28928246 tttatcgtaaaaagttacttccttcctgcgaataatttcacattt 28928202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 24965198 - 24965151
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||||| |||||| ||| || ||||||||||||||||||||    
T  24965198 tttatcgcaaaaccttactttctttctgcgaataatttcacatttcct 24965151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 31500742 - 31500790
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttccta 234  Q
    ||||| ||||||  ||||||||||| |||||||||||| ||||||||||    
T  31500742 tttattgcaaaatattacttccttcatacgaataattttacatttccta 31500790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 41010699 - 41010652
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41010699 tttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 41010652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 2475992 - 2475946
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  2475992 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 2475946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 22572650 - 22572699
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcctat 235  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  22572650 tttatcgcaaaacgttactttcttcctgcgaataatttcacatttcctat 22572699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 29257583 - 29257506
Alignment:
Q  155 ccaggaattttatagagtttgggcnnnnnnntttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    |||||||||||||||||| |||||       |||||||||||||||||||||||| || ||||||||||||||||||||    
T  29257583 ccaggaattttatagagtctgggcaaaaaa-tttatcgcaaaacgttacttcctttctgcgaataatttcacatttcct 29257506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 233
Target Start/End: Original strand, 41114768 - 41114845
Alignment:
Q  155 ccaggaattttatagagtttgggcnnnnnnntttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||||||||| ||||||       ||||||||||||||||||||||||| | ||||||||||||||||||||    
T  41114768 ccaggaattttatagagcttgggcaaaaaa-tttatcgcaaaacgttacttccttcatgcgaataatttcacatttcct 41114845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 17148983 - 17148936
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||    
T  17148983 tttatctcaaaacgttacttccttcctgcgaataatttcacatttcct 17148936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 18299071 - 18299118
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  18299071 tttatcgtaaaacgttacttccttcctgcgaataatttcacatttcct 18299118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 6799814 - 6799861
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    |||||| |||||||||| ||||||||| ||||||||||||||||||||    
T  6799814 tttatcacaaaacgttagttccttcctgcgaataatttcacatttcct 6799861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 17249517 - 17249470
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||| |||||||||||||| |||||| ||||||||||||||||||||    
T  17249517 tttatagcaaaacgttactttcttcctgcgaataatttcacatttcct 17249470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 45444382 - 45444429
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||| ||||||| ||||||||||||| ||||||||||||||||||||    
T  45444382 tttattgcaaaacattacttccttcctgcgaataatttcacatttcct 45444429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 13203954 - 13203910
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacattt 230  Q
    |||||||||||| |||||||||||||  |||||||||||||||||    
T  13203954 tttatcgcaaaatgttacttccttccagcgaataatttcacattt 13203910  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 25563159 - 25563112
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    |||||||||||||||||||||||| || | |||||||||| |||||||    
T  25563159 tttatcgcaaaacgttacttcctttctgcaaataatttcatatttcct 25563112  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 304021 - 304067
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    |||||||||||||||||||| |  || ||||||||||||||||||||    
T  304021 ttatcgcaaaacgttacttcttatctgcgaataatttcacatttcct 304067  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 15651428 - 15651384
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacattt 230  Q
    |||||||||||| ||||| |||||||| |||||||||| ||||||    
T  15651428 tttatcgcaaaatgttacgtccttcctgcgaataattttacattt 15651384  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 26722888 - 26722933
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttc 231  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  26722888 tttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 26722933  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 4843506 - 4843459
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  4843506 tttatcgcaaaacgttacttctttcctgcgaataatttcacatttcct 4843459  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 35300357 - 35300404
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  35300357 tttatcgtaaaacgttacttccttcttacgaataatttcacatttcct 35300404  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 22206616 - 22206662
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||    
T  22206616 ttatcgcaaaatgttacttccttcctgcgaataatttcacatttcct 22206662  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 22228123 - 22228077
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||    
T  22228123 ttatcgcaaaatgttacttccttcctgcgaataatttcacatttcct 22228077  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 42439491 - 42439535
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacattt 230  Q
    ||||||||||||||||||||| || ||||||||||||||||||||    
T  42439491 tttatcgcaaaacgttacttcttttctacgaataatttcacattt 42439535  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 3012507 - 3012461
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    |||| |||||||||||||||||||||  |||||||||||||||||||    
T  3012507 ttattgcaaaacgttacttccttcctgtgaataatttcacatttcct 3012461  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 28693933 - 28693979
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    |||||||||||| |||||||||| || ||||||||||||||||||||    
T  28693933 ttatcgcaaaactttacttcctttctgcgaataatttcacatttcct 28693979  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 30852495 - 30852449
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||| ||| |||||||||| ||||||||||||||||||||    
T  30852495 ttatcgcaaaatgttgcttccttcctgcgaataatttcacatttcct 30852449  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 5991350 - 5991394
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacatttc 231  Q
    ||||||||||| |||||||||||||| |||||||||| |||||||    
T  5991350 ttatcgcaaaatgttacttccttcctgcgaataattttacatttc 5991394  T

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Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 41759556 - 41759596
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcac 226  Q
    ||||||||| ||||||||||||||||| |||||||||||||    
T  41759556 tttatcgcacaacgttacttccttcctgcgaataatttcac 41759596  T

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Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 814903 - 814946
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacattt 230  Q
    |||||||||||||||||||| ||||| | |||||||||||||||    
T  814903 ttatcgcaaaacgttacttcattcctgctaataatttcacattt 814946  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 21932671 - 21932718
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    |||||||||||| |||||||| ||||| |||||||||||| |||||||    
T  21932671 tttatcgcaaaatgttacttctttcctgcgaataatttcatatttcct 21932718  T

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Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 38128910 - 38128957
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||||||||| ||||||||| |  |||||||||||||||||    
T  38128910 tttatcgcaaaacgttatttccttcctgcagataatttcacatttcct 38128957  T

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Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 7873150 - 7873196
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||||||||| |||||||||||||  | ||||||||||||||||||    
T  7873150 ttatcgcaaaatgttacttccttcccgctaataatttcacatttcct 7873196  T

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Target: scaffold0618 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 1912 - 1835
Alignment:
Q  155 ccaggaattttatagagtttgggcnnnnnnntttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    |||||||||||||||||| |||||       |||||||||||||||||||||||| || ||||||||||||||||||||    
T  1912 ccaggaattttatagagtctgggcaaaaaa-tttatcgcaaaacgttacttcctttctgcgaataatttcacatttcct 1835  T

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Target: scaffold0638 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 4263 - 4216
Alignment:
Q  187 ttatcgcaaaacgttacttccttcctacgaataatttcacatttccta 234  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||    
T  4263 ttatcgcaaaatgttacttccttcctgcgaataatttcacatttccta 4216  T

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Target: scaffold0021 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 109233 - 109280
Alignment:
Q  186 tttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 233  Q
    ||||| ||||||| ||||||||||||| ||||||||||||| ||||||    
T  109233 tttattgcaaaacattacttccttcctgcgaataatttcacgtttcct 109280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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