View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19050_low_46 (Length: 249)

Name: NF19050_low_46
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19050_low_46
NF19050_low_46
[»] chr1 (32 HSPs)
chr1 (1-83)||(51065736-51065818)
chr1 (1-68)||(45449247-45449314)
chr1 (1-74)||(47010109-47010182)
chr1 (1-73)||(5694437-5694509)
chr1 (1-68)||(38162966-38163033)
chr1 (2-66)||(12072067-12072131)
chr1 (1-65)||(15227855-15227919)
chr1 (2-82)||(18043279-18043359)
chr1 (1-73)||(29657887-29657959)
chr1 (1-68)||(19010690-19010757)
chr1 (1-68)||(41730424-41730491)
chr1 (1-68)||(48383114-48383181)
chr1 (1-66)||(42769995-42770060)
chr1 (4-68)||(30657721-30657785)
chr1 (1-64)||(24178470-24178533)
chr1 (1-74)||(17333281-17333352)
chr1 (3-68)||(13961329-13961394)
chr1 (1-74)||(14350276-14350347)
chr1 (3-68)||(30294384-30294449)
chr1 (20-68)||(29210529-29210577)
chr1 (1-68)||(9266731-9266798)
chr1 (2-64)||(3784720-3784782)
chr1 (3-73)||(50128170-50128240)
chr1 (1-65)||(47532677-47532741)
chr1 (2-65)||(52431697-52431761)
chr1 (1-44)||(36446352-36446395)
chr1 (2-74)||(38701934-38702002)
chr1 (1-74)||(45431394-45431467)
chr1 (3-43)||(6770455-6770495)
chr1 (1-45)||(12307033-12307077)
chr1 (20-68)||(21112684-21112732)
chr1 (1-65)||(28725911-28725975)
[»] chr5 (17 HSPs)
chr5 (163-237)||(12383423-12383499)
chr5 (1-73)||(11957965-11958037)
chr5 (1-68)||(34650836-34650903)
chr5 (1-74)||(8787455-8787528)
chr5 (4-82)||(35132640-35132718)
chr5 (1-68)||(10054356-10054423)
chr5 (2-65)||(6283679-6283742)
chr5 (1-68)||(13661924-13661991)
chr5 (3-74)||(40564401-40564472)
chr5 (35-74)||(8927553-8927592)
chr5 (2-38)||(9721640-9721676)
chr5 (1-65)||(31467836-31467900)
chr5 (1-73)||(35504239-35504310)
chr5 (1-68)||(11846188-11846255)
chr5 (22-76)||(10070086-10070140)
chr5 (13-65)||(10955957-10956009)
chr5 (20-64)||(19647684-19647728)
[»] chr3 (24 HSPs)
chr3 (1-73)||(39074534-39074606)
chr3 (1-68)||(10617287-10617354)
chr3 (1-74)||(52520797-52520870)
chr3 (1-77)||(272336-272412)
chr3 (1-73)||(43786987-43787059)
chr3 (1-68)||(6842735-6842802)
chr3 (1-68)||(46352750-46352817)
chr3 (1-64)||(49893447-49893510)
chr3 (1-59)||(2505465-2505523)
chr3 (2-76)||(40362575-40362649)
chr3 (1-75)||(48725387-48725461)
chr3 (1-65)||(18014788-18014852)
chr3 (1-64)||(858705-858768)
chr3 (2-73)||(4168300-4168371)
chr3 (1-68)||(11308214-11308280)
chr3 (1-65)||(49529274-49529336)
chr3 (2-68)||(7468528-7468592)
chr3 (3-65)||(42548213-42548274)
chr3 (3-68)||(2938043-2938108)
chr3 (3-48)||(38852335-38852380)
chr3 (1-66)||(41304119-41304184)
chr3 (2-73)||(42964247-42964318)
chr3 (1-68)||(43269742-43269809)
chr3 (1-62)||(53489833-53489894)
[»] chr6 (23 HSPs)
chr6 (1-68)||(3515882-3515949)
chr6 (1-66)||(32985198-32985263)
chr6 (1-73)||(32929506-32929578)
chr6 (1-73)||(392212-392284)
chr6 (1-73)||(4215811-4215883)
chr6 (1-65)||(26467130-26467194)
chr6 (1-65)||(27433608-27433672)
chr6 (2-68)||(1391181-1391247)
chr6 (1-73)||(23402254-23402326)
chr6 (1-68)||(2581068-2581135)
chr6 (1-68)||(12145120-12145187)
chr6 (2-63)||(11115106-11115166)
chr6 (3-68)||(12525837-12525902)
chr6 (1-68)||(18276615-18276685)
chr6 (2-62)||(35044006-35044065)
chr6 (1-48)||(29451138-29451185)
chr6 (1-65)||(1840253-1840317)
chr6 (1-65)||(2350768-2350832)
chr6 (1-65)||(7851165-7851229)
chr6 (1-65)||(34706837-34706901)
chr6 (34-65)||(24663207-24663238)
chr6 (2-73)||(25165411-25165482)
chr6 (2-67)||(3026013-3026078)
[»] chr4 (25 HSPs)
chr4 (1-73)||(4089258-4089330)
chr4 (1-68)||(16820968-16821035)
chr4 (2-73)||(36395216-36395287)
chr4 (3-68)||(4268825-4268890)
chr4 (1-82)||(50619202-50619282)
chr4 (1-65)||(18067885-18067949)
chr4 (1-73)||(29591305-29591377)
chr4 (3-75)||(32217162-32217234)
chr4 (2-74)||(43202381-43202452)
chr4 (1-68)||(12356360-12356427)
chr4 (1-68)||(54897424-54897491)
chr4 (1-73)||(16536164-16536236)
chr4 (1-64)||(789537-789600)
chr4 (1-68)||(33108676-33108743)
chr4 (1-74)||(7769054-7769127)
chr4 (1-62)||(47231881-47231942)
chr4 (1-65)||(43944623-43944686)
chr4 (1-68)||(6164209-6164276)
chr4 (15-73)||(54054659-54054717)
chr4 (1-40)||(52533816-52533855)
chr4 (1-76)||(53003951-53004026)
chr4 (3-73)||(50603346-50603416)
chr4 (2-68)||(54655880-54655945)
chr4 (2-74)||(3783495-3783570)
chr4 (3-44)||(46149057-46149098)
[»] chr2 (27 HSPs)
chr2 (1-73)||(20553047-20553119)
chr2 (1-73)||(31438762-31438834)
chr2 (1-68)||(30486326-30486393)
chr2 (1-68)||(4022482-4022549)
chr2 (1-68)||(22068323-22068390)
chr2 (1-68)||(32360872-32360939)
chr2 (1-74)||(5093537-5093609)
chr2 (1-73)||(22567718-22567790)
chr2 (1-73)||(27856394-27856466)
chr2 (1-68)||(44588018-44588085)
chr2 (2-75)||(34442529-34442601)
chr2 (1-65)||(3668119-3668183)
chr2 (1-73)||(4381911-4381983)
chr2 (1-68)||(31390128-31390195)
chr2 (1-75)||(8969403-8969477)
chr2 (2-64)||(25782840-25782902)
chr2 (2-68)||(26387067-26387133)
chr2 (1-54)||(6580305-6580358)
chr2 (1-65)||(22887866-22887930)
chr2 (1-68)||(561521-561588)
chr2 (2-65)||(1859279-1859342)
chr2 (3-74)||(28601084-28601155)
chr2 (10-68)||(2898196-2898254)
chr2 (34-65)||(10164830-10164861)
chr2 (3-68)||(35851753-35851819)
chr2 (2-63)||(38590883-38590943)
chr2 (33-65)||(29771571-29771603)
[»] chr8 (33 HSPs)
chr8 (1-68)||(34228798-34228865)
chr8 (1-73)||(4537742-4537814)
chr8 (1-73)||(32114025-32114097)
chr8 (1-68)||(39406958-39407023)
chr8 (1-73)||(13643127-13643199)
chr8 (1-73)||(13743552-13743624)
chr8 (1-68)||(168582-168649)
chr8 (1-64)||(2805267-2805330)
chr8 (1-68)||(16394064-16394131)
chr8 (1-68)||(27988503-27988569)
chr8 (1-68)||(28045805-28045871)
chr8 (2-74)||(29444137-29444209)
chr8 (1-68)||(7304521-7304588)
chr8 (1-68)||(16888547-16888614)
chr8 (1-68)||(16890483-16890550)
chr8 (1-68)||(30675576-30675642)
chr8 (2-68)||(11112756-11112822)
chr8 (1-74)||(3930230-3930303)
chr8 (1-66)||(9253907-9253972)
chr8 (2-75)||(42034977-42035050)
chr8 (1-68)||(20831556-20831623)
chr8 (2-68)||(9063055-9063121)
chr8 (1-75)||(40268038-40268112)
chr8 (1-62)||(12203970-12204031)
chr8 (1-62)||(12448398-12448459)
chr8 (3-68)||(28626886-28626950)
chr8 (12-74)||(10618125-10618187)
chr8 (2-68)||(43119334-43119399)
chr8 (11-68)||(9537827-9537884)
chr8 (3-52)||(14191029-14191078)
chr8 (1-57)||(16785202-16785257)
chr8 (1-65)||(29235351-29235415)
chr8 (2-62)||(39206303-39206363)
[»] chr7 (21 HSPs)
chr7 (1-68)||(24438593-24438660)
chr7 (1-73)||(34333399-34333471)
chr7 (2-65)||(42044300-42044362)
chr7 (2-68)||(4628683-4628749)
chr7 (1-66)||(13064881-13064946)
chr7 (1-73)||(12218435-12218506)
chr7 (1-68)||(24798406-24798473)
chr7 (1-81)||(29993477-29993557)
chr7 (2-73)||(30810772-30810843)
chr7 (1-68)||(34606377-34606444)
chr7 (1-48)||(45045886-45045933)
chr7 (3-68)||(5239403-5239468)
chr7 (1-45)||(46716754-46716798)
chr7 (2-68)||(28588026-28588092)
chr7 (1-63)||(47083171-47083232)
chr7 (21-74)||(34546330-34546383)
chr7 (1-68)||(525079-525145)
chr7 (1-48)||(23363190-23363237)
chr7 (1-76)||(38128408-38128483)
chr7 (1-48)||(47839608-47839655)
chr7 (4-66)||(1737099-1737160)
[»] scaffold0021 (1 HSPs)
scaffold0021 (1-75)||(116320-116394)
[»] scaffold0188 (2 HSPs)
scaffold0188 (1-73)||(6108-6180)
scaffold0188 (35-65)||(6260-6290)
[»] scaffold0264 (1 HSPs)
scaffold0264 (1-65)||(23077-23141)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-65)||(53691-53755)
[»] scaffold0425 (1 HSPs)
scaffold0425 (1-68)||(10826-10893)
[»] scaffold0190 (1 HSPs)
scaffold0190 (1-68)||(15012-15079)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-68)||(233969-234036)
[»] scaffold0034 (1 HSPs)
scaffold0034 (2-68)||(95588-95654)
[»] scaffold0045 (2 HSPs)
scaffold0045 (2-56)||(50665-50719)
scaffold0045 (11-68)||(53360-53417)
[»] scaffold0524 (1 HSPs)
scaffold0524 (1-64)||(941-1004)
[»] scaffold0325 (1 HSPs)
scaffold0325 (2-49)||(17493-17540)
[»] scaffold0113 (1 HSPs)
scaffold0113 (1-68)||(41035-41102)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-68)||(68293-68360)


Alignment Details
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 51065818 - 51065736
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctttaacaaaata 83  Q
    ||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||| || ||||||    
T  51065818 ccttttatggtaataattcccttttatggtatgcttaaccagtgccccaggggcaccggttagcaggacccttaaagaaaata 51065736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 45449314 - 45449247
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| |||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  45449314 ccttttatggtaataattgccttttatggtatgtttaaccagtgccccaggggcatcggttagcagga 45449247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 47010109 - 47010182
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatccttt 74  Q
    ||||||||| ||||||||| ||||||||||| | ||||||||||| |||||||||||||||||||||| |||||    
T  47010109 ccttttatggtaataattctcttttatggtatgcttaaccagtgctccaggggcaccggttagcaggacccttt 47010182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 5694437 - 5694509
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    ||||||||| ||||||||||||||||||||| | ||||||||||| || ||||||||||||||||||| ||||    
T  5694437 ccttttatggtaataattcccttttatggtatgcttaaccagtgctccgggggcaccggttagcaggaccctt 5694509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 38162966 - 38163033
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| ||||||||||||||||||||| | |||||| ||||||| |||||||||||||||||||    
T  38162966 ccttttatggtaataattcccttttatggtatgcttaacccgtgccccgggggcaccggttagcagga 38163033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 12072131 - 12072067
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcag 66  Q
    |||||||| |||||||||| |||||||||| | |||||||||||||| |||||||||||||||||    
T  12072131 cttttatggtaataattcctttttatggtatgcttaaccagtgccccgggggcaccggttagcag 12072067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 15227855 - 15227919
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagca 65  Q
    ||||||||| ||||||||||||||||||||| | |||||||||||||| | ||||||||||||||    
T  15227855 ccttttatggtaataattcccttttatggtatgcttaaccagtgccccggaggcaccggttagca 15227919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 18043279 - 18043359
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctttaacaaaat 82  Q
    |||||||| |||||||||  |||||||||| | |||||||||||||| ||||||||||||||||||| |||| || |||||    
T  18043279 cttttatggtaataattctattttatggtatgcttaaccagtgccccgggggcaccggttagcaggacccttaaaaaaaat 18043359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 29657887 - 29657959
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    |||||| || ||||||||||||||||||||| | |||||||||||||  ||||||||||||||||||| ||||    
T  29657887 ccttttttggtaataattcccttttatggtatgcttaaccagtgccctgggggcaccggttagcaggaccctt 29657959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 19010757 - 19010690
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| ||||||||||||||||||||| | |||||||||||||||||  |||||||||| ||||    
T  19010757 ccttttatggtaataattcccttttatggtatgattaaccagtgccccaggaacaccggttagtagga 19010690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 41730424 - 41730491
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||||||||||||||||||||||||| | ||||| ||||||||||  |||| |||||||||||    
T  41730424 ccttttatgataataattcccttttatggtatgcttaacaagtgccccagaagcactggttagcagga 41730491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 48383181 - 48383114
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| ||||||||||||||||||||| | ||||||| |||| ||||||||| |||||||||||    
T  48383181 ccttttatggtaataattcccttttatggtatgcttaaccaatgcctcaggggcactggttagcagga 48383114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 42770060 - 42769995
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcag 66  Q
    ||||||||| |||||||||  |||||||||| | |||||||||||||| |||||||||||||||||    
T  42770060 ccttttatggtaataattctattttatggtatgcttaaccagtgccccgggggcaccggttagcag 42769995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 30657721 - 30657785
Alignment:
Q  4 tttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    |||||||||||||||||||||||||||| | ||||||||| |||| | ||||||| |||||||||    
T  30657721 tttatgataataattcccttttatggtatgcttaaccagtaccccggaggcaccgattagcagga 30657785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 24178533 - 24178470
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagc 64  Q
    ||||||||| |||||||| | |||||||||| | |||||||||||||| |||||||||||||||    
T  24178533 ccttttatggtaataatttcattttatggtatgcttaaccagtgccccgggggcaccggttagc 24178470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 17333352 - 17333281
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatccttt 74  Q
    ||||||||||||||| |||||||||||||||   ||||||| |||||| | ||||||||||||||||| |||||    
T  17333352 ccttttatgataatacttcccttttatggta--cttaaccaatgccccggaggcaccggttagcaggacccttt 17333281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 13961329 - 13961394
Alignment:
Q  3 ttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||| ||||||||  ||||||||||| | ||||||||||| ||| ||||||||||||||||||    
T  13961329 ttttatggtaataattttcttttatggtatgcttaaccagtgctccaagggcaccggttagcagga 13961394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 14350347 - 14350276
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatccttt 74  Q
    ||||||||| |||||||||||||  |||||| | |||||||||||||| ||||||||||||||||||| |||||    
T  14350347 ccttttatggtaataattccctta-atggtatgcttaaccagtgcccc-ggggcaccggttagcaggacccttt 14350276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 30294449 - 30294384
Alignment:
Q  3 ttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||| ||||||||||||||||||||| | |||||| |||| || ||| |||||||||||||||    
T  30294449 ttttatggtaataattcccttttatggtatgcttaacctgtgctccggggacaccggttagcagga 30294384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 29210529 - 29210577
Alignment:
Q  20 ccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    |||||||||||| | |||||||||||||| |||||||||||||||||||    
T  29210529 ccttttatggtatgcttaaccagtgccccgggggcaccggttagcagga 29210577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 9266798 - 9266731
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| ||||||||| |||||||||||   ||||||||||| ||||  ||||||||||||||||    
T  9266798 ccttttatggtaataattcgcttttatggtatacttaaccagtgctccagaagcaccggttagcagga 9266731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 3784782 - 3784720
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagc 64  Q
    |||||||| |||||||| |||||||||||| | |||||| ||| ||| |||||||||||||||    
T  3784782 cttttatggtaataatttccttttatggtatgcttaacccgtgtcccgggggcaccggttagc 3784720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 50128240 - 50128170
Alignment:
Q  3 ttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    ||||||| ||||||||| ||||||||||| | |||||||||| |||||   ||||||||||||||| ||||    
T  50128240 ttttatggtaataattctcttttatggtatgcttaaccagtgtcccagaaacaccggttagcaggaccctt 50128170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 47532741 - 47532677
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagca 65  Q
    |||||||| |||||||||||||||||||||| | ||||||| ||||||   | ||||||||||||    
T  47532741 ccttttataataataattcccttttatggtatgcttaaccaatgccccgaagacaccggttagca 47532677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 52431697 - 52431761
Alignment:
Q  2 cttttatgataataattcccttttat-ggtaagtttaaccagtgccccaggggcaccggttagca 65  Q
    |||||||| |||||||| |||||| | |||| | |||||||||||||||||| ||||||||||||    
T  52431697 cttttatggtaataatttcctttttttggtatgcttaaccagtgccccagggacaccggttagca 52431761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 36446395 - 36446352
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtg 44  Q
    ||||||||  ||||||||||||||||||||| ||||||||||||    
T  36446395 ccttttatagtaataattcccttttatggtatgtttaaccagtg 36446352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 38702002 - 38701934
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatccttt 74  Q
    |||||||| |||||||||    |||||||| | ||||||||||||||  |||||||||||||||||| |||||    
T  38702002 cttttatggtaataattc----ttatggtatgcttaaccagtgccccgagggcaccggttagcaggacccttt 38701934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 45431394 - 45431467
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatccttt 74  Q
    ||||||||| ||||||||| |||||||| ||   |||||||||||||||| | | ||||||| ||||| |||||    
T  45431394 ccttttatggtaataattctcttttatgatatacttaaccagtgccccagagactccggttatcaggacccttt 45431467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 6770455 - 6770495
Alignment:
Q  3 ttttatgataataattcccttttatggtaagtttaaccagt 43  Q
    |||||||||||||||||||||||||| || | |||||||||    
T  6770455 ttttatgataataattcccttttatgatatgcttaaccagt 6770495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12307033 - 12307077
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgc 45  Q
    ||||||||| ||||||||| ||||||||||| | |||||||||||    
T  12307033 ccttttatggtaataattctcttttatggtatgcttaaccagtgc 12307077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 21112732 - 21112684
Alignment:
Q  20 ccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    |||||||||||| | ||||| ||||||||  ||||||||||||||||||    
T  21112732 ccttttatggtatgcttaactagtgccccgagggcaccggttagcagga 21112684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 28725975 - 28725911
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagca 65  Q
    ||||||||| ||| |||| |||||| | ||| | |||||||||||||| ||| ||||||||||||    
T  28725975 ccttttatggtaagaatttccttttttcgtatgcttaaccagtgccccggggacaccggttagca 28725911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 12383499 - 12383423
Alignment:
Q  163 aagaaaaagtttatgtatcaactggtttaaaatatattcttttaagtata--ttttcattaaggactctttaaccct 237  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||| ||||||||||||    
T  12383499 aagaaaaagtttatgtatcaattggtttaaaatatattcttttaagtatattttttcattaagggctctttaaccct 12383423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 11958037 - 11957965
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    ||||||||| ||||||||||||||||||| | | |||||||||||||||||||||||||||||||||| ||||    
T  11958037 ccttttatggtaataattcccttttatggcatgcttaaccagtgccccaggggcaccggttagcaggaccctt 11957965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 34650903 - 34650836
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| ||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||    
T  34650903 ccttttatggtaataattcccttttatggtatgcttaaccagtgccccgggggcaccggttagcagga 34650836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 8787455 - 8787528
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatccttt 74  Q
    |||||||||||||||||||| |||||||||| | |||||| ||||||| ||||||||||||||||||| |||||    
T  8787455 ccttttatgataataattccattttatggtatgcttaacctgtgccccgggggcaccggttagcaggacccttt 8787528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 35132640 - 35132718
Alignment:
Q  4 tttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctttaacaaaat 82  Q
    |||||| ||||||||| ||||||||||| | ||||||| |||||| ||||||||||||||||||| ||||||| |||||    
T  35132640 tttatggtaataattctcttttatggtatgcttaaccaatgccccgggggcaccggttagcaggaccctttaataaaat 35132718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 10054423 - 10054356
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| |||||||||| |||||||||| |||||||| ||||||| |||| ||||||||||||||    
T  10054423 ccttttatggtaataattcctttttatggtatgtttaacccgtgccccgggggtaccggttagcagga 10054356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 6283679 - 6283742
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagca 65  Q
    |||||||| |||||||||  |||||||||| | ||||||||||||| |||||||||||||||||    
T  6283679 cttttatggtaataattcatttttatggtatgcttaaccagtgccctaggggcaccggttagca 6283742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 13661924 - 13661991
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| ||||||||| ||||||||||| | |||||| ||||||| | |||||||||||||||||    
T  13661924 ccttttatggtaataattctcttttatggtatgcttaacccgtgccccggaggcaccggttagcagga 13661991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 40564472 - 40564401
Alignment:
Q  3 ttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatccttt 74  Q
    ||||||| ||||||||| ||||||||||| | ||||||| | ||||| |||||||||||||||||| |||||    
T  40564472 ttttatggtaataattctcttttatggtatgcttaaccaataccccaagggcaccggttagcaggacccttt 40564401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 8927592 - 8927553
Alignment:
Q  35 ttaaccagtgccccaggggcaccggttagcaggatccttt 74  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  8927592 ttaaccagtgccccaggggcaccggttagcaggacccttt 8927553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 9721676 - 9721640
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaa 38  Q
    |||||||||||||||||||||||||||||| ||||||    
T  9721676 cttttatgataataattcccttttatggtatgtttaa 9721640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 31467836 - 31467900
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagca 65  Q
    ||||||||| ||| |||| |||||| | ||| | |||||||||||||||||| ||||||||||||    
T  31467836 ccttttatggtaagaatttcctttttttgtatgcttaaccagtgccccagggacaccggttagca 31467900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 35504310 - 35504239
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    |||||||||  |||||||||||||||||||| | |||||| |||  || ||||||||||||||||||| ||||    
T  35504310 ccttttatggcaataattcccttttatggtatgcttaacccgtg-tccgggggcaccggttagcaggaccctt 35504239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 11846188 - 11846255
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| |||||| |||||||||| ||| | ||||||||||||||  |||||  |||||||||||    
T  11846188 ccttttatggtaataaatcccttttatagtatgcttaaccagtgcccctagggcatgggttagcagga 11846255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 10070086 - 10070140
Alignment:
Q  22 ttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctttaa 76  Q
    |||||||||| | ||||||| || |||||| |||||||||||||||| |||||||    
T  10070086 ttttatggtatgcttaaccaatgtcccaggagcaccggttagcaggaccctttaa 10070140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 10956009 - 10955957
Alignment:
Q  13 ataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagca 65  Q
    ||||||||||||||||||| | |||||||||||||| | |||| | |||||||    
T  10956009 ataattcccttttatggtatgcttaaccagtgccccggaggcaacagttagca 10955957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 19647728 - 19647684
Alignment:
Q  20 ccttttatggtaagtttaaccagtgccccaggggcaccggttagc 64  Q
    |||||||||||| | |||||| ||||||| |||||||||||||||    
T  19647728 ccttttatggtatgcttaacccgtgccccgggggcaccggttagc 19647684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 39074534 - 39074606
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    ||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||    
T  39074534 ccttttatggtaataattcccttttatggtatgcttaaccagtgccccaggggcaccggttagcaggaccctt 39074606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 10617354 - 10617287
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| ||||||||||||||||||||| | |||||| ||||||| |||||||||||||||||||    
T  10617354 ccttttatggtaataattcccttttatggtatgcttaacccgtgccccgggggcaccggttagcagga 10617287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 52520797 - 52520870
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatccttt 74  Q
    ||||||||| |||||||||  |||||||||| | |||||||||||||| ||||||||||||||||||| |||||    
T  52520797 ccttttatggtaataattctattttatggtatgcttaaccagtgccccgggggcaccggttagcaggacccttt 52520870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 272336 - 272412
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctttaac 77  Q
    ||||||||| ||||||||||||||||||||| | |||| | ||||||| ||||||||||||||||||| || |||||    
T  272336 ccttttatggtaataattcccttttatggtatgcttaatcggtgccccgggggcaccggttagcaggacccattaac 272412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 43786987 - 43787059
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    ||||||||| |||||||||  |||||||||| | |||||||||||||| ||||||||||||||||||| ||||    
T  43786987 ccttttatggtaataattctattttatggtatgcttaaccagtgccccgggggcaccggttagcaggaccctt 43787059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 6842735 - 6842802
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| ||||||||||| ||||||||| | |||||||||||||| |||||| ||||||||||||    
T  6842735 ccttttatggtaataattcccatttatggtatgcttaaccagtgccccgggggcagcggttagcagga 6842802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 46352750 - 46352817
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| ||||||||||||||||||||| | |||||| ||||||| | |||||||||||||||||    
T  46352750 ccttttatggtaataattcccttttatggtatgcttaacccgtgccccggaggcaccggttagcagga 46352817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 49893447 - 49893510
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagc 64  Q
    ||||||||| ||||||||||||||||||||| | |||| ||||||||| |||||||||||||||    
T  49893447 ccttttatggtaataattcccttttatggtatgcttaatcagtgccccgggggcaccggttagc 49893510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 2505465 - 2505523
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccgg 59  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||  ||||||||||    
T  2505465 ccttttatggtaataattcccttttatggtatgtttaaccagtgccctgggggcaccgg 2505523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 40362649 - 40362575
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctttaa 76  Q
    |||||||| ||||||||| ||||||||||| | |||||||||||||| |||| |||| ||||||||| |||||||    
T  40362649 cttttatggtaataattctcttttatggtatgcttaaccagtgccccgggggtaccgattagcaggaccctttaa 40362575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 48725387 - 48725461
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatccttta 75  Q
    ||||||||| ||||||||||||||||||||| | |||||||||||||| ||  ||| ||||||||||| ||||||    
T  48725387 ccttttatggtaataattcccttttatggtatgcttaaccagtgccccgggaccacgggttagcaggacccttta 48725461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 18014788 - 18014852
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagca 65  Q
    |||||||||||||||||| |||||||||||| | |||| ||||||||| |||||||| |||||||    
T  18014788 ccttttatgataataatttccttttatggtatgcttaatcagtgccccgggggcaccagttagca 18014852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 858705 - 858768
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagc 64  Q
    ||||||||| |||||||| |||||||||||| | |||||| ||||||| |||||||||||||||    
T  858705 ccttttatggtaataatttccttttatggtatgcttaacccgtgccccgggggcaccggttagc 858768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 4168300 - 4168371
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    |||||||| ||||||||| ||||||||||| | |||||| || |||| ||||||||||||||||||| ||||    
T  4168300 cttttatggtaataattctcttttatggtatgcttaacccgtaccccgggggcaccggttagcaggaccctt 4168371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 11308280 - 11308214
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| |||||||||| |||||||||| | ||||||| |||||||||||||||| |||||||||    
T  11308280 ccttttatggtaataattcc-ttttatggtatgcttaaccaatgccccaggggcaccgattagcagga 11308214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 49529336 - 49529274
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagca 65  Q
    ||||||||| |||||||| |||||||||||| ||||||||||||  || ||||||||||||||||    
T  49529336 ccttttatggtaataatttccttttatggtatgtttaaccagtg--ccgggggcaccggttagca 49529274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 7468528 - 7468592
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    |||||||||||||||| ||||||||||||| | |||| ||||||||| || ||||||||||||||||    
T  7468528 cttttatgataataat-cccttttatggtatgcttaatcagtgcccc-ggagcaccggttagcagga 7468592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 42548213 - 42548274
Alignment:
Q  3 ttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagca 65  Q
    ||||||| ||||||||||||||||||||| | ||||||||||| || ||| ||||||||||||    
T  42548213 ttttatggtaataattcccttttatggtatgcttaaccagtgctcc-gggacaccggttagca 42548274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 2938108 - 2938043
Alignment:
Q  3 ttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||| ||||||||| ||||||||||| | ||||| ||| ||||  ||||||||||||||||||    
T  2938108 ttttatggtaataattcacttttatggtatgcttaacgagtaccccgagggcaccggttagcagga 2938043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 38852335 - 38852380
Alignment:
Q  3 ttttatgataataattcccttttatggtaagtttaaccagtgcccc 48  Q
    ||||||||||||||||| ||||||||||| |||||||| |||||||    
T  38852335 ttttatgataataattcacttttatggtatgtttaacccgtgcccc 38852380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 41304119 - 41304184
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcag 66  Q
    ||||||||| |||||||| |||||||||||| | ||||||| |||||| | | |||||||||||||    
T  41304119 ccttttatggtaataatttccttttatggtatgcttaaccaatgccccggagacaccggttagcag 41304184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 42964318 - 42964247
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    |||||||  ||||||||| |||||||| || | |||||||||| | ||||| ||||||||||||||| ||||    
T  42964318 cttttatagtaataattcacttttatgatatgcttaaccagtgtctcagggacaccggttagcaggaccctt 42964247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 43269809 - 43269742
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||  ||||||||  | ||||||||| | |||||||||||||| | |||||||||||||||||    
T  43269809 ccttttatagtaataattatcctttatggtatgcttaaccagtgccccggaggcaccggttagcagga 43269742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 53489894 - 53489833
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggtta 62  Q
    |||||||||||||||||||  |||||||||| | ||||||| |||||| | |||||| ||||    
T  53489894 ccttttatgataataattctattttatggtatgcttaaccaatgccccggtggcaccagtta 53489833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 3515882 - 3515949
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  3515882 ccttttatggtaataattcccttttatggtatgtttaacctgtgccccaggggcaccggttagcagga 3515949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 32985263 - 32985198
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcag 66  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||    
T  32985263 ccttttatgataataattcccttttatggtatgcttaaccagtgccccgggggcaccggttagcag 32985198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 32929578 - 32929506
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    ||||||||| ||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||| ||||    
T  32929578 ccttttatggtaataattcccttttatggtatgcttaaccagtgccccgggggcaccggttagcaggaccctt 32929506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 392212 - 392284
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    ||||||||| ||||||||| ||||||||||| | |||||||||||||| ||||||||||||||||||| ||||    
T  392212 ccttttatggtaataattctcttttatggtatgcttaaccagtgccccgggggcaccggttagcaggaccctt 392284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 4215811 - 4215883
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    ||||||||| |||||||| |||||||||||| | |||||||||||||| |||||| |||||||||||| ||||    
T  4215811 ccttttatggtaataatttccttttatggtatgcttaaccagtgccccgggggcatcggttagcaggaccctt 4215883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 26467194 - 26467130
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagca 65  Q
    ||||||||| ||||||||||||||||||||| || ||||||||||||| | ||||||||||||||    
T  26467194 ccttttatggtaataattcccttttatggtatgtctaaccagtgccccggaggcaccggttagca 26467130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 27433608 - 27433672
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagca 65  Q
    ||||||||| ||||||||||||||||||||| |||||||| || |||| ||||||||||||||||    
T  27433608 ccttttatggtaataattcccttttatggtatgtttaacccgttccccgggggcaccggttagca 27433672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 1391247 - 1391181
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    |||||||||||||||||||||||||||||| | ||||||||||  |||||  |||||||||||||||    
T  1391247 cttttatgataataattcccttttatggtatgcttaaccagtgttccaggaacaccggttagcagga 1391181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 23402254 - 23402326
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    ||||||||| |||||||| |||||||||||| | |||||| ||||||| | ||||||||||||||||| ||||    
T  23402254 ccttttatggtaataattaccttttatggtatgcttaacccgtgccccggaggcaccggttagcaggaccctt 23402326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 2581068 - 2581135
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| ||||||||||||||||||||| | ||||||| | |||| || ||||||||||||||||    
T  2581068 ccttttatggtaataattcccttttatggtatgcttaaccaataccccgggagcaccggttagcagga 2581135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 12145187 - 12145120
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    |||||||||||||||||| |||||||| ||| | ||||||||||| || | |||||||||||||||||    
T  12145187 ccttttatgataataatttccttttatagtatgcttaaccagtgctccggaggcaccggttagcagga 12145120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 11115166 - 11115106
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttag 63  Q
    |||||||| |||||||||||||||||| || |||||||||||||||| ||| ||||||||||    
T  11115166 cttttatggtaataattcccttttatgatatgtttaaccagtgcccc-gggacaccggttag 11115106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 12525837 - 12525902
Alignment:
Q  3 ttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||| |||||||||||||||||| || | ||||| ||||||||||||  ||||||||||||||    
T  12525837 ttttatggtaataattcccttttatgatatgcttaactagtgccccagggataccggttagcagga 12525902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 18276685 - 18276615
Alignment:
Q  1 ccttttatgataataattcccttttatggtaa---gtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| |||||||| ||||||||||||    | |||||||||||||| |||||||||||||||||||    
T  18276685 ccttttatggtaataatttccttttatggtattatgcttaaccagtgcccctggggcaccggttagcagga 18276615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 35044006 - 35044065
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggtta 62  Q
    |||||||| ||||||||| ||||||||||| | |||||||||||||| |||||||||||||    
T  35044006 cttttatggtaataattctcttttatggtatgcttaaccagtgcccc-ggggcaccggtta 35044065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 29451185 - 29451138
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgcccc 48  Q
    ||||||||||||||||||||||||||||||| | |||||| |||||||    
T  29451185 ccttttatgataataattcccttttatggtatgcttaacccgtgcccc 29451138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 1840317 - 1840253
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagca 65  Q
    ||||| ||| |||||||||||||||||| || ||||||||||||||| ||   ||||||||||||    
T  1840317 cctttcatggtaataattcccttttatgatatgtttaaccagtgccctagaaacaccggttagca 1840253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 2350768 - 2350832
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagca 65  Q
    ||||||||| |||||||||||||||||| || | ||||||||| |||| | | ||||||||||||    
T  2350768 ccttttatggtaataattcccttttatgatatgcttaaccagtaccccggagacaccggttagca 2350832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 7851229 - 7851165
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagca 65  Q
    ||||||||| ||||||||||||||||||||| | |||||  |||||| || | ||||||||||||    
T  7851229 ccttttatggtaataattcccttttatggtatgcttaactcgtgccctagagacaccggttagca 7851165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 34706837 - 34706901
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagca 65  Q
    ||||||||| ||| |||| |||||| | ||| | |||||||||||||| ||||||||||||||||    
T  34706837 ccttttatggtaagaatttccttttttcgtatgcttaaccagtgccccgggggcaccggttagca 34706901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 65
Target Start/End: Complemental strand, 24663238 - 24663207
Alignment:
Q  34 tttaaccagtgccccaggggcaccggttagca 65  Q
    ||||||||||||||||||||||||||||||||    
T  24663238 tttaaccagtgccccaggggcaccggttagca 24663207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 25165482 - 25165411
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    |||||||||||||||||| |||||| | || | ||||||| |||||  || |||||||||||||||| ||||    
T  25165482 cttttatgataataattctcttttacgatatgcttaaccaatgccctgggagcaccggttagcaggaccctt 25165411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 3026078 - 3026013
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagg 67  Q
    |||||||  ||||||||| ||||||||||| | |||| ||||| |||  |||||||||||||||||    
T  3026078 cttttatcgtaataattctcttttatggtatgcttaatcagtgtcccgagggcaccggttagcagg 3026013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 4089258 - 4089330
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    ||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||| ||||    
T  4089258 ccttttatggtaataattctcttttatggtatgtttaaccagtgccccaggggcaccagttagcaggaccctt 4089330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 16820968 - 16821035
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| |||||||| |||||||||||| | |||||||||||||| |||||||||||||||||||    
T  16820968 ccttttatggtaataatttccttttatggtatgcttaaccagtgccccgggggcaccggttagcagga 16821035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 36395216 - 36395287
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    |||||||||||||||||||||||||||||| | |||||||||||||  |||||||| |||||||||| ||||    
T  36395216 cttttatgataataattcccttttatggtatgcttaaccagtgccctgggggcaccagttagcaggaccctt 36395287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 4268890 - 4268825
Alignment:
Q  3 ttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||| ||||||||||||||||||||| | ||||||||||||||  ||||||||||||||||||    
T  4268890 ttttatggtaataattcccttttatggtatgattaaccagtgccccgagggcaccggttagcagga 4268825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 50619202 - 50619282
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctttaacaaaat 82  Q
    ||||||||| ||||||||||||||||||||| | |||||||||| ||||||||||||||||||| ||| |||| || |||||    
T  50619202 ccttttatggtaataattcccttttatggtatgcttaaccagtg-cccaggggcaccggttagcgggacccttaaaaaaaat 50619282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 18067949 - 18067885
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagca 65  Q
    ||||||||| ||||||||||||||||||||| |||||||| || |||| ||||||||||||||||    
T  18067949 ccttttatggtaataattcccttttatggtatgtttaacccgttccccgggggcaccggttagca 18067885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 29591305 - 29591377
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    ||||||||| |||||||| |||||||||||| | ||||| |||||||| ||||||||||||||||||| ||||    
T  29591305 ccttttatggtaataattaccttttatggtatgcttaactagtgccccgggggcaccggttagcaggaccctt 29591377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 32217162 - 32217234
Alignment:
Q  3 ttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatccttta 75  Q
    ||||||||||||||||||||||||||||| | |||||| ||||||| | ||||||||||| ||||| ||||||    
T  32217162 ttttatgataataattcccttttatggtatgcttaacctgtgccccggaggcaccggttaacaggacccttta 32217234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 43202452 - 43202381
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatccttt 74  Q
    |||||||| ||||||||| ||||||||||||| |||||||||| ||| ||||||||||||||||||| |||||    
T  43202452 cttttatggtaataattctcttttatggtaagcttaaccagtg-cccgggggcaccggttagcaggacccttt 43202381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 12356360 - 12356427
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||||||||||||| ||||||||||| | ||||||||||  || |||||||||||||||||||    
T  12356360 ccttttatgataataattctcttttatggtatgcttaaccagtgttccgggggcaccggttagcagga 12356427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 54897424 - 54897491
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| |||||||| |||||||||||| |||||||||||| ||| | |||||||||||||||||    
T  54897424 ccttttatggtaataatttccttttatggtatgtttaaccagtgtcccggaggcaccggttagcagga 54897491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 16536164 - 16536236
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    ||||||||| |||||||||  ||||||||||   |||||||||||||| ||||||||||||||||||| ||||    
T  16536164 ccttttatggtaataattctattttatggtattcttaaccagtgccccgggggcaccggttagcaggaccctt 16536236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 789600 - 789537
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagc 64  Q
    ||||||||| ||||||||||||||||||||| | |||||||||  ||||| |||||||||||||    
T  789600 ccttttatggtaataattcccttttatggtatgcttaaccagtagcccagaggcaccggttagc 789537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 33108743 - 33108676
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| |||||||||| |||||||||| | |||||| ||||||| | |||||||||||||||||    
T  33108743 ccttttatggtaataattcctttttatggtatgcttaacccgtgccccggaggcaccggttagcagga 33108676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 7769054 - 7769127
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatccttt 74  Q
    ||||||||| ||||||||| ||||||||| |   |||||| ||||||| ||||||||||||||||||| |||||    
T  7769054 ccttttatggtaataattctcttttatggcatacttaacccgtgccccgggggcaccggttagcaggacccttt 7769127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 47231942 - 47231881
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggtta 62  Q
    ||||||||||||||||||||||||||||||| ||||||||| | |||| |  ||||||||||    
T  47231942 ccttttatgataataattcccttttatggtatgtttaaccaataccccggaagcaccggtta 47231881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 43944623 - 43944686
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagca 65  Q
    ||||||||| ||||||||||||| ||||||| | ||||||||||||| | |||||||||||||||    
T  43944623 ccttttatggtaataattcccttgtatggtatgcttaaccagtgcccga-gggcaccggttagca 43944686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 6164209 - 6164276
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| ||||||||| ||||||||||| | ||||||||| ||||  || |||||||||||||||    
T  6164209 ccttttatggtaataattctcttttatggtatgcttaaccagtaccccgaggacaccggttagcagga 6164276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 54054659 - 54054717
Alignment:
Q  15 aattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    |||| |||||||||||| | |||||||||||||| |||||||||||| |||||| ||||    
T  54054659 aatttccttttatggtatgcttaaccagtgccccgggggcaccggttggcaggaccctt 54054717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 52533855 - 52533816
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaacc 40  Q
    ||||||||| ||||||||||||||||||||| ||||||||    
T  52533855 ccttttatggtaataattcccttttatggtatgtttaacc 52533816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 53004026 - 53003951
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctttaa 76  Q
    |||||||  |||||||||| |||||||| || | |||| ||||| ||| ||| ||||||||||||||| |||||||    
T  53004026 ccttttaaaataataattctcttttatgatatgcttaatcagtgtccccgggacaccggttagcaggaccctttaa 53003951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 50603346 - 50603416
Alignment:
Q  3 ttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    ||||||||||||||||| ||||||||||| | ||||||||| ||||  |  |||| |||||||||| ||||    
T  50603346 ttttatgataataattctcttttatggtatgcttaaccagtaccccgagaacaccagttagcaggaccctt 50603416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 54655945 - 54655880
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    |||||| ||||||||||| || ||||| || | |||||||||| ||| |||||||||||||||||||    
T  54655945 cttttaggataataattctctcttatgatatgcttaaccagtgtccc-ggggcaccggttagcagga 54655880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 3783570 - 3783495
Alignment:
Q  2 cttttatgataataattcccttttatggtaagttta---accagtgccccaggggcaccggttagcaggatccttt 74  Q
    |||||||| ||||||||||||||||||||| | |||   || |||||||| || |||||||||| ||||| |||||    
T  3783570 cttttatggtaataattcccttttatggtatgcttaagtactagtgccccgggagcaccggttaacaggacccttt 3783495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 46149057 - 46149098
Alignment:
Q  3 ttttatgataataattcccttttatggtaagtttaaccagtg 44  Q
    ||||||| ||||||||| ||||||||||| ||||||||||||    
T  46149057 ttttatggtaataattctcttttatggtatgtttaaccagtg 46149098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 20553047 - 20553119
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    ||||||||| ||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||| ||||    
T  20553047 ccttttatggtaataattcccttttatggtatgcttaaccagtgccccgggggcaccggttagcaggaccctt 20553119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 31438762 - 31438834
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||| ||| ||||||||||||||| ||||    
T  31438762 ccttttatgataataattcccttttatggtatgcttaaccagtgccccggggacaccggttagcaggaccctt 31438834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 30486326 - 30486393
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| ||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||    
T  30486326 ccttttatggtaataattcccttttatggtatgcttaaccagtgccccgggggcaccggttagcagga 30486393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 4022549 - 4022482
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    |||||||||||||||||| ||||||||| || |||||||||||| ||| |||||||||||||||||||    
T  4022549 ccttttatgataataatttccttttatgatatgtttaaccagtgtcccgggggcaccggttagcagga 4022482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 22068390 - 22068323
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| ||||||||||||||||||||| | |||||||||||||| ||||||||| |||||||||    
T  22068390 ccttttatggtaataattcccttttatggtatgcttaaccagtgccccgggggcaccgattagcagga 22068323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 32360939 - 32360872
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| ||||||||||||||||||||| | ||||||| |||||| |||||||||||||||||||    
T  32360939 ccttttatggtaataattcccttttatggtatgcttaaccaatgccccgggggcaccggttagcagga 32360872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 5093609 - 5093537
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatccttt 74  Q
    |||||||||||||||||| |||||||||||| ||||||| |||||||| ||||||||||||| ||||| |||||    
T  5093609 ccttttatgataataatttccttttatggtatgtttaactagtgcccc-ggggcaccggttaacaggacccttt 5093537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 22567718 - 22567790
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    ||||||||| ||||||||| ||||||||||| | |||||| |||| |||||||||||||||||||||| ||||    
T  22567718 ccttttatggtaataattctcttttatggtatgcttaacccgtgctccaggggcaccggttagcaggaccctt 22567790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 27856466 - 27856394
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    ||||||||| |||||||| |||||||||||| | |||||||||||||| |||||| |||||||||||| ||||    
T  27856466 ccttttatggtaataatttccttttatggtatgcttaaccagtgccccgggggcatcggttagcaggaccctt 27856394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 44588018 - 44588085
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| ||||||||||||||||||||| | ||||| |||||||| |||| ||||||||||||||    
T  44588018 ccttttatggtaataattcccttttatggtatgcttaacaagtgccccgggggtaccggttagcagga 44588085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 34442601 - 34442529
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatccttta 75  Q
    |||||||| ||||||||||||||||||||| | |||||||||| ||| |||||| |||||||||||| ||||||    
T  34442601 cttttatggtaataattcccttttatggtatgcttaaccagtg-cccgggggcatcggttagcaggacccttta 34442529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 3668183 - 3668119
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagca 65  Q
    ||||||||| |||||||| |||||||| ||| ||||||||||||||||  |||||||||||||||    
T  3668183 ccttttatggtaataatttccttttatagtatgtttaaccagtgccccgagggcaccggttagca 3668119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 4381911 - 4381983
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    ||||||||| |||||||||| |||||||||| | |||||||||||||| || |||| ||||||||||| ||||    
T  4381911 ccttttatggtaataattccattttatggtatgcttaaccagtgccccgggagcactggttagcaggaccctt 4381983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 31390128 - 31390195
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| ||||||||||||||||||||| | |||||| |||| || ||||||||| |||||||||    
T  31390128 ccttttatggtaataattcccttttatggtatgcttaacccgtgctccgggggcaccgattagcagga 31390195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 8969477 - 8969403
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatccttta 75  Q
    ||||||||| |||||||| |||||||| ||| | ||||| |||||||| ||||||||||||||||| | ||||||    
T  8969477 ccttttatggtaataatttccttttatagtatgcttaactagtgcccctggggcaccggttagcagtacccttta 8969403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 25782902 - 25782840
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagc 64  Q
    |||||||||||||||||||||||||||||| | |||||||||| ||| ||| || ||||||||    
T  25782902 cttttatgataataattcccttttatggtatgcttaaccagtgtcccggggacatcggttagc 25782840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 26387133 - 26387067
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    |||||||| ||||||||||||||||||||| | ||||||||||||   ||||||||||||| |||||    
T  26387133 cttttatggtaataattcccttttatggtatgcttaaccagtgccttgggggcaccggttaacagga 26387067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 6580305 - 6580358
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggc 54  Q
    ||||||||| ||||||||||||||||||||| | |||||||||||||| |||||    
T  6580305 ccttttatggtaataattcccttttatggtatgcttaaccagtgccccgggggc 6580358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 22887866 - 22887930
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagca 65  Q
    ||||||||| ||||||||| ||||||||||| | ||||||||||| || ||||||||| ||||||    
T  22887866 ccttttatggtaataattctcttttatggtatgcttaaccagtgctccgggggcaccgattagca 22887930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 561588 - 561521
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    |||||||| |||||||||| ||||||||||| | |||| |||| |||| | |||||||||||||||||    
T  561588 ccttttataataataattctcttttatggtatgcttaatcagtaccccggaggcaccggttagcagga 561521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 1859279 - 1859342
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagca 65  Q
    |||||||| ||||||||| ||||||||||| | ||||||||||||| |||  ||||||||||||    
T  1859279 cttttatggtaataattctcttttatggtatgcttaaccagtgccctaggaacaccggttagca 1859342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 28601084 - 28601155
Alignment:
Q  3 ttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatccttt 74  Q
    ||||||| ||||||||| ||||||||||| | ||||||||||| |  || |||||||||||||||| |||||    
T  28601084 ttttatggtaataattctcttttatggtatgcttaaccagtgcactgggagcaccggttagcaggacccttt 28601155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 2898196 - 2898254
Alignment:
Q  10 ataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    |||||||||| ||||||||||| |||||| ||||| ||| | |||||||||||||||||    
T  2898196 ataataattctcttttatggtatgtttaatcagtgtcccggaggcaccggttagcagga 2898254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 65
Target Start/End: Original strand, 10164830 - 10164861
Alignment:
Q  34 tttaaccagtgccccaggggcaccggttagca 65  Q
    ||||||||||||||||||||||||||||||||    
T  10164830 tttaaccagtgccccaggggcaccggttagca 10164861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 35851819 - 35851753
Alignment:
Q  3 ttttatgataataattcccttttatggtaagtttaaccagtgcc-ccaggggcaccggttagcagga 68  Q
    ||||||| ||||||||| ||||||||||| | ||||||| |||| |  |||||||||||||||||||    
T  35851819 ttttatggtaataattctcttttatggtatgcttaaccaatgcctcggggggcaccggttagcagga 35851753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 38590943 - 38590883
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttag 63  Q
    |||||||| ||||||||||||||||||||| | ||||||| | |||| | ||||||||||||    
T  38590943 cttttatggtaataattcccttttatggtatgcttaaccaatacccc-gaggcaccggttag 38590883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 29771571 - 29771603
Alignment:
Q  33 gtttaaccagtgccccaggggcaccggttagca 65  Q
    |||||||| ||||||||||||||||||||||||    
T  29771571 gtttaacccgtgccccaggggcaccggttagca 29771603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 34228798 - 34228865
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| ||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||    
T  34228798 ccttttatggtaataattcccttttatggtatgcttaaccagtgccccgggggcaccggttagcagga 34228865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 4537814 - 4537742
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    ||||||||| ||||||||||||||||||||| | |||||| ||||||||| ||||||||||||||||| ||||    
T  4537814 ccttttatggtaataattcccttttatggtatgcttaacctgtgccccagaggcaccggttagcaggaccctt 4537742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 32114025 - 32114097
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||| |||| | ||||||||||||||| ||||    
T  32114025 ccttttatgataataattcccttttatagtatgtttaaccagtgctccagagccaccggttagcaggaccctt 32114097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 39406958 - 39407023
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||  ||||||||||||||||||    
T  39406958 ccttttatgataataattcccttttatggtatgtttaactagtgcccc--gggcaccggttagcagga 39407023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 13643127 - 13643199
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    ||||||||| ||||||||| ||||||||||| | ||||||||||||| ||| |||||||||||||||| ||||    
T  13643127 ccttttatggtaataattctcttttatggtatgcttaaccagtgccctaggagcaccggttagcaggaccctt 13643199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 13743552 - 13743624
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    ||||||||| ||||||||| ||||||||||| | ||||||||||||| ||| |||||||||||||||| ||||    
T  13743552 ccttttatggtaataattctcttttatggtatgcttaaccagtgccctaggagcaccggttagcaggaccctt 13743624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 168582 - 168649
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| |||||||||| |||||||||| | ||||||| |||||| |||||||||||||||||||    
T  168582 ccttttatggtaataattccattttatggtatgcttaaccaatgccccgggggcaccggttagcagga 168649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 2805330 - 2805267
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagc 64  Q
    ||||||||| ||||||||||||||||||||| | |||||||||||||| | |||||||||||||    
T  2805330 ccttttatggtaataattcccttttatggtatgcttaaccagtgccccggaggcaccggttagc 2805267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 16394131 - 16394064
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| ||||||||| ||||||||||| | ||||||| |||||| |||||||||||||||||||    
T  16394131 ccttttatgctaataattctcttttatggtatgcttaaccaatgccccgggggcaccggttagcagga 16394064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 27988569 - 27988503
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| ||||||||||||||||||||| | |||||||||| ||| |||||||||||||||||||    
T  27988569 ccttttatggtaataattcccttttatggtatgcttaaccagtg-cccgggggcaccggttagcagga 27988503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 28045871 - 28045805
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| ||||||||||||||||||||| | |||||||||| ||| |||||||||||||||||||    
T  28045871 ccttttatggtaataattcccttttatggtatgcttaaccagtg-cccgggggcaccggttagcagga 28045805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 29444209 - 29444137
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatccttt 74  Q
    |||||||| ||||||||||||||||||||| |||||||||||| ||| | ||||||| ||| ||||| |||||    
T  29444209 cttttatggtaataattcccttttatggtatgtttaaccagtgtcccggaggcaccgattaacaggacccttt 29444137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 7304588 - 7304521
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    |||||||||| |||||||| ||||||||||| | ||||||||||| || |||||||||||||| ||||    
T  7304588 ccttttatgaaaataattctcttttatggtatgcttaaccagtgctccgggggcaccggttagtagga 7304521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 16888614 - 16888547
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| ||||||||| ||||| ||||| | ||||||| |||||| |||||||||||||||||||    
T  16888614 ccttttatggtaataattctcttttgtggtatgcttaaccaatgccccgggggcaccggttagcagga 16888547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 16890550 - 16890483
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| |||||||||| |||||||||| | |||||| ||||| | |||||||||||||||||||    
T  16890550 ccttttatggtaataattcctttttatggtatgcttaaccggtgcctccggggcaccggttagcagga 16890483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 30675642 - 30675576
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| |||||||||| |||||||||| | |||||||||||||| ||| |||||||||||||||    
T  30675642 ccttttatggtaataattcc-ttttatggtatgcttaaccagtgccccggggacaccggttagcagga 30675576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 11112756 - 11112822
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    |||||||||||||||||| ||||||||||| | |||||| ||||||  ||||||| |||||||||||    
T  11112756 cttttatgataataattcacttttatggtatgcttaacctgtgccctgggggcactggttagcagga 11112822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 3930303 - 3930230
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatccttt 74  Q
    |||||| ||||||||||| ||||||||| || | ||||||||||||||||| ||| || ||||||||| |||||    
T  3930303 ccttttttgataataatttccttttatgatatgcttaaccagtgccccaggagcatcgattagcaggacccttt 3930230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 9253972 - 9253907
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcag 66  Q
    ||||||||  ||||||||| ||||||||||| | ||||||| || |||||||||||||||||||||    
T  9253972 ccttttatagtaataattctcttttatggtatgcttaaccaatgtcccaggggcaccggttagcag 9253907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 42035050 - 42034977
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatccttta 75  Q
    |||||||| ||||||||||||||||||||| | |||||  ||||||||| | ||||||||||| ||| ||||||    
T  42035050 cttttatggtaataattcccttttatggtatgcttaacacgtgccccagagacaccggttagcgggacccttta 42034977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 20831623 - 20831556
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| ||||||||| ||||||||||| | |||| |||||| || ||| |||||||||||||||    
T  20831623 ccttttatggtaataattctcttttatggtatgcttaatcagtgctcccgggacaccggttagcagga 20831556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 9063121 - 9063055
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    |||||||| ||||||||||||||| || || | |||||||||||||| |  ||||||||||||||||    
T  9063121 cttttatggtaataattcccttttgtgatatgcttaaccagtgccccggaagcaccggttagcagga 9063055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 40268038 - 40268112
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatccttta 75  Q
    |||||||||||||||||| |||||| | ||| |||||||| |||||||||| ||||| |||| || || ||||||    
T  40268038 ccttttatgataataatttcctttttttgtatgtttaacccgtgccccaggagcaccagttaacatgacccttta 40268112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 12203970 - 12204031
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggtta 62  Q
    ||||||||||||||||||||||||||||||| | | |||||||| ||| ||| || ||||||    
T  12203970 ccttttatgataataattcccttttatggtatgctgaaccagtgtcccggggacatcggtta 12204031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 12448398 - 12448459
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggtta 62  Q
    ||||||||||||||||||||||||||||||| | | |||||||| ||| ||| || ||||||    
T  12448398 ccttttatgataataattcccttttatggtatgctgaaccagtgtcccggggacatcggtta 12448459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 28626886 - 28626950
Alignment:
Q  3 ttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||||||||||||||||||||||| | |||| |||||  || || ||||||||||||||||    
T  28626886 ttttatgataataattcccttttatggtatgcttaatcagtg-tccgggagcaccggttagcagga 28626950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 10618125 - 10618187
Alignment:
Q  12 aataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatccttt 74  Q
    ||||||| |||||||||||| | |||||| ||| | | ||||||||||||||||||| |||||    
T  10618125 aataattaccttttatggtatgcttaacccgtgtctccggggcaccggttagcaggacccttt 10618187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 43119334 - 43119399
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    |||||||| | ||||||| ||||||||||| | ||||||| || ||| |||||||||||||||||||    
T  43119334 cttttatggtgataattctcttttatggtatgcttaaccaatggccc-ggggcaccggttagcagga 43119399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 9537884 - 9537827
Alignment:
Q  11 taataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    |||||||| |||||||||||| | |||||||||| ||| | | |||||||||||||||    
T  9537884 taataatttccttttatggtatgcttaaccagtgtcccggagacaccggttagcagga 9537827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 14191078 - 14191029
Alignment:
Q  3 ttttatgataataattcccttttatggtaagtttaaccagtgccccaggg 52  Q
    ||||||||||||||||| ||||||| |||  ||||||||||||| |||||    
T  14191078 ttttatgataataattctcttttatagtatttttaaccagtgcctcaggg 14191029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 16785202 - 16785257
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcacc 57  Q
    |||||||| |||||||||| ||||||||||| | |||||| ||| ||||||||||||    
T  16785202 ccttttataataataattctcttttatggtatgattaacccgtg-cccaggggcacc 16785257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 29235351 - 29235415
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagca 65  Q
    |||||||||||||||||| |||||||| | | | |||||||||| ||| ||  ||||||||||||    
T  29235351 ccttttatgataataatttccttttataggatgcttaaccagtgtcccgggaacaccggttagca 29235415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 39206303 - 39206363
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggtta 62  Q
    |||||||||||| |||| |||||| | ||| | |||||| ||||||| |||||||||||||    
T  39206303 cttttatgataaaaatttcctttttttgtatgcttaaccggtgcccccggggcaccggtta 39206363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 24438593 - 24438660
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| ||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||    
T  24438593 ccttttatggtaataattcccttttatggtatgcttaaccagtgccccgggggcaccggttagcagga 24438660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 34333399 - 34333471
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    ||||||||| |||||||||| |||||||||| |||||||| ||||||| ||||||||||||||||||| ||||    
T  34333399 ccttttatggtaataattcctttttatggtatgtttaacccgtgccccgggggcaccggttagcaggaccctt 34333471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 42044362 - 42044300
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagca 65  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  42044362 cttttatggtaataattcccttttatggtatgtttaaccagtgcccc-ggggcaccggttagca 42044300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 4628683 - 4628749
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    |||||||| ||||||||||||||||||||| | ||||||||||||  ||||||||||||||||||||    
T  4628683 cttttatggtaataattcccttttatggtatgcttaaccagtgccttaggggcaccggttagcagga 4628749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 13064946 - 13064881
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcag 66  Q
    ||||||||| ||||||||||||||||||||| | ||||||||||| | ||||||||||||||||||    
T  13064946 ccttttatggtaataattcccttttatggtatgcttaaccagtgctctaggggcaccggttagcag 13064881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 12218506 - 12218435
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    ||||||||| ||||||||| ||||||||||| |||||||||||||||| ||| ||||||||||||||| ||||    
T  12218506 ccttttatggtaataattctcttttatggtatgtttaaccagtgcccc-gggacaccggttagcaggaccctt 12218435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 24798473 - 24798406
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| ||||||||||||||||| ||| | |||||||||||||| |||||||| ||||||||||    
T  24798473 ccttttatggtaataattcccttttatagtatgcttaaccagtgccccgggggcaccagttagcagga 24798406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 29993557 - 29993477
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctttaacaaaa 81  Q
    ||||||||| ||||||||||||||||||||| | |||||||||| ||| | |||| |||||||||||| || |||| ||||    
T  29993557 ccttttatggtaataattcccttttatggtatgcttaaccagtgtcccggaggcatcggttagcaggacccattaaaaaaa 29993477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 30810772 - 30810843
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    |||||||| ||||||||  ||||||||||| ||||||||| ||||||||||| ||||||||| |||| ||||    
T  30810772 cttttatggtaataattttcttttatggtatgtttaaccaatgccccaggggtaccggttagtaggaccctt 30810843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 34606377 - 34606444
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| |||||||| |||||||||||| | |||||| ||||||| || ||||||||||||||||    
T  34606377 ccttttatggtaataattaccttttatggtatgcttaacccgtgccccgggagcaccggttagcagga 34606444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 45045886 - 45045933
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgcccc 48  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||    
T  45045886 ccttttatgataataattcccttttatggtatgcttaaccagtgcccc 45045933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 5239403 - 5239468
Alignment:
Q  3 ttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||| ||||||||||||||||||||| | |||||  ||||||| ||||||| |||||||||||    
T  5239403 ttttatggtaataattcccttttatggtatgcttaacttgtgcccccggggcactggttagcagga 5239468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 46716754 - 46716798
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgc 45  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||    
T  46716754 ccttttatgataataattcccttttatggtatgtttaaccggtgc 46716798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 28588026 - 28588092
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    |||||||| ||||||||||||||||||||| ||||||||| | |||| ||  || ||||||||||||    
T  28588026 cttttatggtaataattcccttttatggtatgtttaaccaataccccgggaacatcggttagcagga 28588092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 47083171 - 47083232
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttag 63  Q
    ||||||||| |||||||||||||||||| || ||||||||| ||| || ||||||||||||||    
T  47083171 ccttttatggtaataattcccttttatgatatgtttaaccaatgctcc-ggggcaccggttag 47083232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 34546383 - 34546330
Alignment:
Q  21 cttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatccttt 74  Q
    |||||||||||   |||| ||||||||||| |||||||||||||||||||||||    
T  34546383 cttttatggtatacttaatcagtgccccagaggcaccggttagcaggatccttt 34546330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 525145 - 525079
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| ||||||||| |||||||| || ||||||||||| | || || ||||||||||||||||    
T  525145 ccttttatggtaataattctcttttatgatatgtttaaccagtactcc-ggagcaccggttagcagga 525079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 23363237 - 23363190
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgcccc 48  Q
    ||||||||| ||||| ||| ||||||||||| ||||||||||||||||    
T  23363237 ccttttatggtaatatttctcttttatggtatgtttaaccagtgcccc 23363190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 38128408 - 38128483
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctttaa 76  Q
    ||||||||| ||| |||| |||||| | ||| | |||||||||||||| | |||||||||||||| || |||||||    
T  38128408 ccttttatggtaagaatttcctttttttgtatgcttaaccagtgccccggaggcaccggttagcatgaccctttaa 38128483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 47839608 - 47839655
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgcccc 48  Q
    ||||||||| ||||||||||||||||||||| |  |||||||||||||    
T  47839608 ccttttatggtaataattcccttttatggtatgaataaccagtgcccc 47839655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 1737099 - 1737160
Alignment:
Q  4 tttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcag 66  Q
    ||||||||||||||||  |||||||||| | |||||||||||||| |  ||||||||||||||    
T  1737099 tttatgataataattca-ttttatggtatgcttaaccagtgccccggaagcaccggttagcag 1737160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 116320 - 116394
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatccttta 75  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||  |||||||||||| | ||||||    
T  116320 ccttttatgataataattcccttttatggtatgtttaacccgtgccccagggataccggttagcagtacccttta 116394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 6180 - 6108
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcaggatcctt 73  Q
    ||||||||| ||||||| ||||||||||||| |||||||| ||||||| ||||||||||||||||||| ||||    
T  6180 ccttttatggtaataatccccttttatggtatgtttaacccgtgccccgggggcaccggttagcaggaccctt 6108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 65
Target Start/End: Original strand, 6260 - 6290
Alignment:
Q  35 ttaaccagtgccccaggggcaccggttagca 65  Q
    |||||||||||||||||||||||||||||||    
T  6260 ttaaccagtgccccaggggcaccggttagca 6290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 23077 - 23141
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagca 65  Q
    ||||||||| ||||||||| ||||||||||| ||||||||||||||||| || ||||||||||||    
T  23077 ccttttatgttaataattctcttttatggtatgtttaaccagtgccccaaggacaccggttagca 23141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 53755 - 53691
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagca 65  Q
    ||||||||| ||||||||||||||||||||| |||||||| || |||| ||||||||||||||||    
T  53755 ccttttatggtaataattcccttttatggtatgtttaacccgttccccgggggcaccggttagca 53691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 10826 - 10893
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| ||||||||||| ||||||||| | |||||||||||| | |||||| ||||||||||||    
T  10826 ccttttatggtaataattcccatttatggtatgcttaaccagtgcctcgggggcagcggttagcagga 10893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 15012 - 15079
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| ||||||||||||||||||||| | |||||||||||||| | ||||| ||||| |||||    
T  15012 ccttttatggtaataattcccttttatggtatgcttaaccagtgccccggaggcactggttaacagga 15079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 233969 - 234036
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    |||||||||| ||||||| |||||||||||| |||||||| || | || |||||||||||||||||||    
T  233969 ccttttatgaaaataatttccttttatggtatgtttaaccggtactccgggggcaccggttagcagga 234036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 95654 - 95588
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    |||||||| ||||||||||||||||||||| |||||||| ||  ||||||||| |||||||| ||||    
T  95654 cttttatggtaataattcccttttatggtatgtttaaccggtatcccaggggctccggttaggagga 95588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 50665 - 50719
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcac 56  Q
    |||||||||||||||||| ||||||| ||| ||||||||||||| || |||||||    
T  50665 cttttatgataataattctcttttatagtatgtttaaccagtgctccgggggcac 50719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 53417 - 53360
Alignment:
Q  11 taataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||||| ||||||||||| | ||||| |||||||| | |||||||||||||||||    
T  53417 taataattctcttttatggtatgcttaactagtgccccggaggcaccggttagcagga 53360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 941 - 1004
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagc 64  Q
    ||||||||  ||||||||| ||||||||||| | ||||||||||||| | || |||||||||||    
T  941 ccttttatagtaataattctcttttatggtatgcttaaccagtgccctaaggacaccggttagc 1004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 17540 - 17493
Alignment:
Q  2 cttttatgataataattcccttttatggtaagtttaaccagtgcccca 49  Q
    ||||||||||||||||||| |||||||||| |||||||| ||| ||||    
T  17540 cttttatgataataattcctttttatggtatgtttaaccggtgtccca 17493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 41035 - 41102
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    |||||||||||||||||| ||||||||| || | |||||||||| ||| | | |||||||| ||||||    
T  41035 ccttttatgataataatttccttttatgatatgcttaaccagtgtcccggagacaccggttggcagga 41102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 68360 - 68293
Alignment:
Q  1 ccttttatgataataattcccttttatggtaagtttaaccagtgccccaggggcaccggttagcagga 68  Q
    ||||||| | ||||||||||||||||||||| | ||||||||| ||||   |||| ||||||||||||    
T  68360 ccttttaaggtaataattcccttttatggtatgcttaaccagtaccccgaaggcatcggttagcagga 68293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University