View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19050_low_48 (Length: 247)
Name: NF19050_low_48
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19050_low_48 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 51845300 - 51845073
Alignment:
| Q |
20 |
tatcttgtccggatccatcgctaggtggtgacgttaaatccgaagaaggatcgcatgctttgtcaagtggcttcccacaaagctcttcatttcctgcaaa |
119 |
Q |
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| T |
51845300 |
tatcttgtccggatccatcgctaggtggtgacgttaaatccgaagaaggatcgcatgctttgtcaagtggcttcccacaaagctcttcatttcctgcaaa |
51845201 |
T |
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| Q |
120 |
agattttgcctcatacttggacaagggaccaggtattgcaccttgtaacttgttgttagacacgtctaaagatttaatatcttgtttgaattctggaata |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
51845200 |
agattttgcctcatacttggacaagggaccaggtattgcaccttgtaacttgttgttagacatgtctaaagatttaatatcttgtttgaattctggaata |
51845101 |
T |
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| Q |
220 |
ggaccagagaactcattgttatcgagat |
247 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
51845100 |
ggaccagagaactcattgttatcgagat |
51845073 |
T |
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