View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19050_low_49 (Length: 247)
Name: NF19050_low_49
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19050_low_49 |
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| [»] scaffold0648 (1 HSPs) |
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| [»] scaffold0274 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 24 - 229
Target Start/End: Original strand, 7763546 - 7763751
Alignment:
| Q |
24 |
aatatagtgatggtctgaaatgtcagtgacagtgtcaaattgcttaaaactttgaagtttcctcagagtttcactttctggtttatcagtagctttcatt |
123 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7763546 |
aatatagtgatggtctgaaatgtcaatgacagtgtcaaattgcttaaaactttgaagtttcctcagagtttcactttctggtttatcagtagctttcatt |
7763645 |
T |
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| Q |
124 |
ttcgggttcatcggtgattggccacgcctaaacggctgtaatgcacctgatttcttcttactaggggcagctgaaaacatatgaaggtagtcatcatcgt |
223 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7763646 |
ttcaggttcatcggtgattggccacgcctaaacggctgtaatgcacctgatttcttcttactaggggcagctgaaaacatatgaaggtagtcatcatcgt |
7763745 |
T |
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| Q |
224 |
cgaatg |
229 |
Q |
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|||||| |
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| T |
7763746 |
cgaatg |
7763751 |
T |
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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 41441916 - 41441827
Alignment:
| Q |
24 |
aatatagtgatggtctgaaatgtcagtgacagtgtcaaattgcttaaaactttgaagtttcctcagagtttcactttctggtttatcagt |
113 |
Q |
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|||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||| |
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| T |
41441916 |
aataaagttatggtctgaaatgtcggtgacagtgtcaaattgcttaaaactttgaagtttcctcagagtttcattttcgggttcatcagt |
41441827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 41425855 - 41425766
Alignment:
| Q |
24 |
aatatagtgatggtctgaaatgtcagtgacagtgtcaaattgcttaaaactttgaagtttcctcagagtttcactttctggtttatcagt |
113 |
Q |
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|||| ||| |||||||||| ||||| ||| |||||||||||||||||||||| |||||| |||||||||||| |||| |||| |||||| |
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| T |
41425855 |
aataaagtaatggtctgaagtgtcactgatagtgtcaaattgcttaaaacttccaagttttctcagagtttcattttcgggttcatcagt |
41425766 |
T |
|
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Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 41453082 - 41453002
Alignment:
| Q |
33 |
atggtctgaaatgtcagtgacagtgtcaaattgcttaaaactttgaagtttcctcagagtttcactttctggtttatcagt |
113 |
Q |
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|||||||||| ||||||||||| ||||||||| |||||||||| |||||||| |||||||||| |||| |||| |||||| |
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| T |
41453082 |
atggtctgaagtgtcagtgacaatgtcaaattacttaaaacttcgaagtttcttcagagtttcgttttcgggttcatcagt |
41453002 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 41431268 - 41431179
Alignment:
| Q |
24 |
aatatagtgatggtctgaaatgtcagtgacagtgtcaaattgcttaaaactttgaagtttcctcagagtttcactttctggtttatcagt |
113 |
Q |
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|||| ||| |||||| ||| |||| | ||||| ||||||||||||||| ||| |||||||| ||||||||||| |||| |||| |||||| |
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| T |
41431268 |
aataaagtaatggtccgaactgtccgcgacagcgtcaaattgcttaaagcttcgaagtttcttcagagtttcattttcaggttcatcagt |
41431179 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 33369503 - 33369423
Alignment:
| Q |
33 |
atggtctgaaatgtcagtgacagtgtcaaattgcttaaaactttgaagtttcctcagagtttcactttctggtttatcagt |
113 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||| |||| |||||| |
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| T |
33369503 |
atggtctgaggtgtcagtgacagtgtcaaattgcttaaaacttcgaagtttcctaagagtttcattttcgggttcatcagt |
33369423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 33363093 - 33363011
Alignment:
| Q |
24 |
aatatagtgatggtctgaaatgtcagtgacagtgtcaaattgcttaaaactttgaagtttcctcagagtttcactttctggtt |
106 |
Q |
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|||| ||| |||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||| |||||| |||| |||| |
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| T |
33363093 |
aataaagtaatggtctgaagtgtcagtaacagtgtcaaattgcttaaaacttcgaagtttcctcagggtttcattttcgggtt |
33363011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 5344 - 5255
Alignment:
| Q |
24 |
aatatagtgatggtctgaaatgtcagtgacagtgtcaaattgcttaaaactttgaagtttcctcagagtttcactttctggtttatcagt |
113 |
Q |
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|||| ||| |||||| ||| ||||| ||| |||||||||||||||||||||| |||||| |||||||||||| |||| |||| |||||| |
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| T |
5344 |
aataaagtaatggtccgaagtgtcactgatagtgtcaaattgcttaaaacttccaagttttctcagagtttcattttcgggttcatcagt |
5255 |
T |
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Target: scaffold0274 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 18114 - 18203
Alignment:
| Q |
24 |
aatatagtgatggtctgaaatgtcagtgacagtgtcaaattgcttaaaactttgaagtttcctcagagtttcactttctggtttatcagt |
113 |
Q |
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|||| ||| |||||| ||| ||||| ||| |||||||||||||||||||||| |||||| |||||||||||| |||| |||| |||||| |
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| T |
18114 |
aataaagtaatggtccgaagtgtcactgatagtgtcaaattgcttaaaacttccaagttttctcagagtttcattttcgggttcatcagt |
18203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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