View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19050_low_53 (Length: 241)
Name: NF19050_low_53
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19050_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 20967952 - 20968157
Alignment:
| Q |
1 |
aacaataaaaatgaataatttatagagtctcttctcttgttcatcatcagtttgaatgtctctcttttgcttccagctcaattttttattttgtctcctc |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
20967952 |
aacaataaaaatgaataatttatatagtctcttctcttgttcatcatcagtatgagtgtctctcttttgcttccagttcaattttttattttgtctcctc |
20968051 |
T |
|
| Q |
101 |
atcttcaaaacaagaatgaatgcatgttagagtctgcttccaattaaatcattagagcaactccaccttcatctct--acacattcttcatctttgttct |
198 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||| |
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|
| T |
20968052 |
atcttcaaaacaagaatgaatgcatgttagagtctgcttccaattaaatcattagaccaactccaccttcatctctacacacattcttcatctctgttct |
20968151 |
T |
|
| Q |
199 |
atctca |
204 |
Q |
| |
|
|||||| |
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|
| T |
20968152 |
atctca |
20968157 |
T |
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