View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19050_low_56 (Length: 237)
Name: NF19050_low_56
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19050_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 22 - 222
Target Start/End: Original strand, 12383603 - 12383804
Alignment:
| Q |
22 |
ttttataagtatttacactcatttttatttacactaagggc-ttgctaaataagctcttcgaatttcatctctatcatttggataataagatgacaattg |
120 |
Q |
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| T |
12383603 |
ttttataagtatttacactcattttaatttacactaagggccttgctaaataagctcttcgaatttcatctctgtcatttggataataacatgacaattg |
12383702 |
T |
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| Q |
121 |
tttcctttctccaggatcaacaggaagattttccaaatcaatctatagaaatccgtttttgaatgatgatggttgtttatgtgttggtgttagtgtagtt |
220 |
Q |
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| T |
12383703 |
tttcctttctccaggatcagcaggaagattttccaaatcaacctatagaaatccgtttttgaatgatgctggttgtttatgtgttggtgttggtgtagtt |
12383802 |
T |
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| Q |
221 |
tc |
222 |
Q |
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|| |
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| T |
12383803 |
tc |
12383804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 63 - 222
Target Start/End: Original strand, 26588762 - 26588924
Alignment:
| Q |
63 |
ttgctaaataagctcttcgaatttcatctctatcatttggataataagatgacaattgtttcctttctccaggatcaacaggaagattttccaaatcaat |
162 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
26588762 |
ttgctaaataagctcttcgaatttcatctctgtcatttggatgataacatgacaattgtttcctttctccaggatcagctggaagattttccaaatcaac |
26588861 |
T |
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| Q |
163 |
ctatagaaatccgtttttgaatgatg---atggttgtttatgtgttggtgttagtgtagtttc |
222 |
Q |
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|| ||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||| |
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| T |
26588862 |
ctctagaaatccgtttttgaatgatggccctggttgttcatgtgttggtgttggtgtagtttc |
26588924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 63 - 222
Target Start/End: Original strand, 7733007 - 7733169
Alignment:
| Q |
63 |
ttgctaaataagctcttcgaatttcatctctatcatttggataataagatgacaattgtttcctttctccaggatcaacaggaagattttccaaatcaat |
162 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||| ||||| | | ||||||||||||||||||| |
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| T |
7733007 |
ttgctaaataagctcttcgaatttcatctctttcatttggatgataacatgacaattgtttcctttctctaggattagctggaagattttccaaatcaac |
7733106 |
T |
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| Q |
163 |
ctatagaaatccgtttttgaatgatg---atggttgtttatgtgttggtgttagtgtagtttc |
222 |
Q |
| |
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|| ||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||| |
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| T |
7733107 |
ctctagaaatccgtttttgaatgatggccctggttgttcatgtgttggtgttggtgtagtttc |
7733169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 63 - 222
Target Start/End: Original strand, 4791378 - 4791540
Alignment:
| Q |
63 |
ttgctaaataagctcttcgaatttcatctctatcatttggataataagatgacaattgtttcctttctccaggatcaacaggaagattttccaaatcaat |
162 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| | | ||||||||||||||||||| |
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| T |
4791378 |
ttgctaaataagctcttcgaatttcatctctatcatttggatgataacatgacaattgtttcctttctccaggattagctggaagattttccaaatcaac |
4791477 |
T |
|
| Q |
163 |
ctatagaaatccgtttttgaatgatg---atggttgtttatgtgttggtgttagtgtagtttc |
222 |
Q |
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|| ||||||||| ||||||||||||| |||| ||| ||||||||||||| |||||||||| |
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| T |
4791478 |
ctctagaaatccatttttgaatgatggccctggtcgttcatgtgttggtgttggtgtagtttc |
4791540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 63 - 222
Target Start/End: Original strand, 18550039 - 18550201
Alignment:
| Q |
63 |
ttgctaaataagctcttcgaatttcatctctatcatttggataataagatgacaattgtttcctttctccaggatcaacaggaagattttccaaatcaat |
162 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||| | | ||||||||||||||||||| |
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| T |
18550039 |
ttgctaaataagctcttcgaatttcatctctgtcatttggatgataacatgacaattgtttcctttctccaggattagctggaagattttccaaatcaac |
18550138 |
T |
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| Q |
163 |
ctatagaaatccgtttttgaatgatg---atggttgtttatgtgttggtgttagtgtagtttc |
222 |
Q |
| |
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|| ||||||||| ||||||||||||| |||||||| ||||||||||||| |||||||||| |
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| T |
18550139 |
ctctagaaatccatttttgaatgatggccctggttgttcatgtgttggtgttggtgtagtttc |
18550201 |
T |
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