View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19050_low_59 (Length: 234)

Name: NF19050_low_59
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19050_low_59
NF19050_low_59
[»] chr6 (13 HSPs)
chr6 (14-105)||(19165538-19165629)
chr6 (177-231)||(25020505-25020561)
chr6 (177-234)||(5134411-5134470)
chr6 (177-230)||(18904660-18904715)
chr6 (177-231)||(3448414-3448470)
chr6 (177-231)||(12089159-12089215)
chr6 (178-231)||(2970251-2970306)
chr6 (178-234)||(6530182-6530240)
chr6 (178-229)||(19165414-19165467)
chr6 (181-231)||(16251504-16251556)
chr6 (178-231)||(12127887-12127942)
chr6 (178-231)||(22389728-22389783)
chr6 (178-231)||(30566120-30566175)
[»] chr2 (13 HSPs)
chr2 (177-231)||(36520762-36520813)
chr2 (177-231)||(19905632-19905688)
chr2 (177-234)||(34018047-34018106)
chr2 (178-234)||(3179383-3179441)
chr2 (180-231)||(8234772-8234825)
chr2 (177-231)||(580760-580816)
chr2 (177-231)||(1836650-1836706)
chr2 (177-231)||(17154711-17154767)
chr2 (178-231)||(11133138-11133193)
chr2 (180-231)||(3037602-3037655)
chr2 (178-228)||(22538604-22538656)
chr2 (178-231)||(29664665-29664720)
chr2 (178-231)||(32891343-32891398)
[»] chr5 (18 HSPs)
chr5 (178-230)||(18478066-18478120)
chr5 (177-228)||(18872586-18872637)
chr5 (178-231)||(29096286-29096341)
chr5 (178-228)||(32158392-32158444)
chr5 (178-231)||(6806618-6806673)
chr5 (177-226)||(9577360-9577411)
chr5 (178-231)||(29841410-29841465)
chr5 (177-229)||(1244704-1244758)
chr5 (178-230)||(19058982-19059036)
chr5 (179-231)||(38618660-38618714)
chr5 (178-228)||(2029106-2029158)
chr5 (177-231)||(20945868-20945924)
chr5 (181-231)||(42455375-42455427)
chr5 (178-228)||(43166734-43166786)
chr5 (178-231)||(843346-843401)
chr5 (179-231)||(24205497-24205549)
chr5 (183-228)||(27219546-27219593)
chr5 (178-231)||(30403812-30403867)
[»] chr7 (15 HSPs)
chr7 (178-229)||(2366421-2366474)
chr7 (177-231)||(34948168-34948224)
chr7 (179-234)||(45011637-45011694)
chr7 (181-231)||(21285334-21285386)
chr7 (177-231)||(29658249-29658305)
chr7 (178-231)||(33202532-33202587)
chr7 (181-234)||(37129340-37129395)
chr7 (179-231)||(45198077-45198131)
chr7 (178-233)||(27907874-27907931)
chr7 (177-231)||(38451925-38451981)
chr7 (178-231)||(4169138-4169193)
chr7 (178-231)||(14102523-14102578)
chr7 (178-231)||(14412540-14412595)
chr7 (178-231)||(22706006-22706061)
chr7 (178-231)||(47552275-47552330)
[»] chr8 (16 HSPs)
chr8 (178-231)||(42762010-42762063)
chr8 (177-234)||(24074565-24074624)
chr8 (178-229)||(3379626-3379679)
chr8 (177-234)||(2376577-2376630)
chr8 (178-231)||(36359696-36359751)
chr8 (178-231)||(43468683-43468738)
chr8 (178-234)||(7649587-7649645)
chr8 (177-229)||(9525021-9525075)
chr8 (178-234)||(23857301-23857359)
chr8 (177-229)||(24608460-24608514)
chr8 (177-232)||(14684193-14684250)
chr8 (178-229)||(27558849-27558902)
chr8 (179-229)||(34182984-34183034)
chr8 (177-231)||(4798518-4798574)
chr8 (192-234)||(33570421-33570465)
chr8 (178-231)||(10184779-10184834)
[»] chr3 (16 HSPs)
chr3 (177-231)||(33206819-33206875)
chr3 (177-231)||(46328901-46328957)
chr3 (178-231)||(34344756-34344811)
chr3 (177-234)||(43566773-43566832)
chr3 (177-231)||(13539941-13539997)
chr3 (177-231)||(14417930-14417986)
chr3 (181-231)||(35477793-35477845)
chr3 (178-231)||(53870896-53870951)
chr3 (184-231)||(24537889-24537938)
chr3 (178-229)||(43774249-43774302)
chr3 (177-228)||(47191438-47191491)
chr3 (181-231)||(27066672-27066724)
chr3 (177-234)||(17439942-17440001)
chr3 (177-234)||(36727440-36727499)
chr3 (178-231)||(42832040-42832095)
chr3 (178-231)||(45713542-45713597)
[»] chr4 (14 HSPs)
chr4 (178-231)||(30152176-30152231)
chr4 (179-231)||(44074915-44074969)
chr4 (177-231)||(29269292-29269348)
chr4 (178-231)||(20753103-20753158)
chr4 (178-231)||(31578079-31578134)
chr4 (177-229)||(30295577-30295631)
chr4 (177-229)||(30324479-30324533)
chr4 (179-230)||(12820384-12820437)
chr4 (183-230)||(39992898-39992947)
chr4 (181-231)||(3465645-3465697)
chr4 (178-228)||(17859843-17859895)
chr4 (182-231)||(28221289-28221340)
chr4 (178-231)||(37274642-37274697)
chr4 (178-231)||(41943969-41944024)
[»] chr1 (21 HSPs)
chr1 (178-234)||(39433417-39433475)
chr1 (177-231)||(15774289-15774345)
chr1 (177-231)||(47939176-47939232)
chr1 (178-231)||(3532952-3533007)
chr1 (178-231)||(11405518-11405573)
chr1 (178-231)||(19793588-19793643)
chr1 (178-231)||(35593825-35593880)
chr1 (178-231)||(37733817-37733872)
chr1 (178-234)||(34560316-34560374)
chr1 (178-229)||(749565-749618)
chr1 (178-229)||(17064245-17064298)
chr1 (178-229)||(38019925-38019978)
chr1 (177-231)||(15368867-15368923)
chr1 (177-231)||(39994825-39994881)
chr1 (177-231)||(46116151-46116207)
chr1 (179-232)||(4354084-4354139)
chr1 (189-234)||(18923874-18923921)
chr1 (178-231)||(37490952-37491007)
chr1 (185-234)||(39434677-39434728)
chr1 (178-231)||(42832009-42832064)
chr1 (177-234)||(48110588-48110647)
[»] scaffold1112 (1 HSPs)
scaffold1112 (179-231)||(2419-2470)
[»] scaffold1086 (1 HSPs)
scaffold1086 (178-231)||(2550-2605)


Alignment Details
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 19165629 - 19165538
Alignment:
Q  14 cttatttgggtaaaagttacaaaatgtgaatttatgagtttaaattataaattaagaagaaaaatgccagactaaaatttgataccccatac 105  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19165629 cttatttgggtaaaagctacaaaatgtgaatttatgagtttaaattataaattaagaagaaaaatgccagactaaaatttgataccccatac 19165538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 25020505 - 25020561
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    |||||||||||||| |||||||||||||||  ||| |||||||||||||||||||||    
T  25020505 ggtcaggtagcctagtggctagaattcaccttataaggtgaataagtggggtgtccg 25020561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 5134411 - 5134470
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccgagg 234  Q
    |||||||||||||| |||||||||||||||  ||| ||||||||||||||||||| ||||    
T  5134411 ggtcaggtagcctagtggctagaattcaccttataaggtgaataagtggggtgtctgagg 5134470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 18904660 - 18904715
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtcc 230  Q
    |||||||||||||| |||||||||||||||  ||| ||||||||||||||||||||    
T  18904660 ggtcaggtagcctagtggctagaattcaccttataaggtgaataagtggggtgtcc 18904715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 231
Target Start/End: Complemental strand, 3448470 - 3448414
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    |||||||||||||| |||||||||||||||  ||| | |||||||||||||||||||    
T  3448470 ggtcaggtagcctattggctagaattcaccttataagatgaataagtggggtgtccg 3448414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 231
Target Start/End: Complemental strand, 12089215 - 12089159
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    ||||||||| |||| |||||||||||||||  ||| |||||||||||||||||||||    
T  12089215 ggtcaggtatcctagtggctagaattcaccttataaggtgaataagtggggtgtccg 12089159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 2970306 - 2970251
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    ||||||||||| ||||||||||||||| |  ||| |||||||||||||||||||||    
T  2970306 gtcaggtagccaaatggctagaattcatcttataaggtgaataagtggggtgtccg 2970251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 6530182 - 6530240
Alignment:
Q  178 gtcaggtagcctaatggctagaattcaccatat--ggtgaataagtggggtgtccgagg 234  Q
    |||| |||| ||| ||||||||||||||| |||  ||||||||||||||||||||||||    
T  6530182 gtcaagtagtctagtggctagaattcaccttataaggtgaataagtggggtgtccgagg 6530240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 19165467 - 19165414
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtc 229  Q
    ||||||||| ||| |||||||||||||||  ||| |||||||||||||||||||    
T  19165467 gtcaggtagactagtggctagaattcaccttataaggtgaataagtggggtgtc 19165414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 16251504 - 16251556
Alignment:
Q  181 aggtagcctaatggctagaattcaccatat--ggtgaataagtggggtgtccg 231  Q
    |||||||||| || |||||||||||| |||  |||||||||||||||||||||    
T  16251504 aggtagcctagtgactagaattcaccttataaggtgaataagtggggtgtccg 16251556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 12127887 - 12127942
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    ||||||||| ||| |||||||||||||||  ||| ||||||||||||| |||||||    
T  12127887 gtcaggtagtctagtggctagaattcaccttataaggtgaataagtggcgtgtccg 12127942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 22389728 - 22389783
Alignment:
Q  178 gtcaggtagcctaatggctagaattcaccatat--ggtgaataagtggggtgtccg 231  Q
    ||||||||| |||  |||||||||||||| |||  |||||||||||||||||||||    
T  22389728 gtcaggtagtctagcggctagaattcaccttataaggtgaataagtggggtgtccg 22389783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 30566175 - 30566120
Alignment:
Q  178 gtcaggtagcctaatggctagaattcaccatat--ggtgaataagtggggtgtccg 231  Q
    ||||||||| ||| ||||| ||||||||| |||  |||||||||||||||||||||    
T  30566175 gtcaggtagtctagtggctggaattcaccttataaggtgaataagtggggtgtccg 30566120  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 36520762 - 36520813
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcaccatatggtgaataagtggggtgtccg 231  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  36520762 ggtcaggtagcctaatggctagaattcacc---tggtgaataagtggggtgtccg 36520813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 19905632 - 19905688
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    ||||||||||||||||||||||||||||||  ||| ||||||||||| |||||||||    
T  19905632 ggtcaggtagcctaatggctagaattcaccttataaggtgaataagtcgggtgtccg 19905688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 34018047 - 34018106
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcaccatat--ggtgaataagtggggtgtccgagg 234  Q
    |||||||||||||| ||| ||||||||||| |||  ||||||||||||||||||||||||    
T  34018047 ggtcaggtagcctagtggttagaattcaccttataaggtgaataagtggggtgtccgagg 34018106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 3179441 - 3179383
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccgagg 234  Q
    ||||||||||||| |||||||||||||||  ||| ||||||||||||||||||| ||||    
T  3179441 gtcaggtagcctagtggctagaattcaccttataaggtgaataagtggggtgtctgagg 3179383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 8234772 - 8234825
Alignment:
Q  180 caggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    ||||||||||| |||||||||||||||  ||| |||||||||||||||||||||    
T  8234772 caggtagcctagtggctagaattcaccttataaggtgaataagtggggtgtccg 8234825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 580760 - 580816
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    |||||||||||||| ||||||||||||| |  ||| |||||||||||||||||||||    
T  580760 ggtcaggtagcctagtggctagaattcatcttataaggtgaataagtggggtgtccg 580816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 231
Target Start/End: Complemental strand, 1836706 - 1836650
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    |||||| ||||||| |||||||||||||||  ||||||||||||||| |||||||||    
T  1836706 ggtcagatagcctagtggctagaattcaccttatatggtgaataagtagggtgtccg 1836650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 231
Target Start/End: Complemental strand, 17154767 - 17154711
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    |||||||||||||| ||||||||| |||||  ||| |||||||||||||||||||||    
T  17154767 ggtcaggtagcctagtggctagaactcaccttataaggtgaataagtggggtgtccg 17154711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 11133193 - 11133138
Alignment:
Q  178 gtcaggtagcctaatggctagaattcaccatat--ggtgaataagtggggtgtccg 231  Q
    |||||||| |||| ||||||||||||||| |||  |||||||||||||||||||||    
T  11133193 gtcaggtaacctagtggctagaattcaccttataaggtgaataagtggggtgtccg 11133138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 3037602 - 3037655
Alignment:
Q  180 caggtagcctaatggctagaattcaccatat--ggtgaataagtggggtgtccg 231  Q
    ||||||||||| || |||||||||||| |||  |||||||||||||||||||||    
T  3037602 caggtagcctagtgcctagaattcaccttataaggtgaataagtggggtgtccg 3037655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 22538656 - 22538604
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgt 228  Q
    ||||||||||||| |||||||||||||||  ||| |||||||||||| |||||    
T  22538656 gtcaggtagcctagtggctagaattcaccttataaggtgaataagtgaggtgt 22538604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 29664720 - 29664665
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    ||||||||| ||| |||||||||||||||  ||| | |||||||||||||||||||    
T  29664720 gtcaggtagtctagtggctagaattcaccttataagatgaataagtggggtgtccg 29664665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 32891398 - 32891343
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    ||||||||||||| ||||||||||||| |  ||| | |||||||||||||||||||    
T  32891398 gtcaggtagcctagtggctagaattcatcttataagatgaataagtggggtgtccg 32891343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 18478120 - 18478066
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtcc 230  Q
    |||||||||||||||||||||||||||||  ||| ||||||||||||||||||||    
T  18478120 gtcaggtagcctaatggctagaattcaccttataaggtgaataagtggggtgtcc 18478066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 18872637 - 18872586
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcaccatatggtgaataagtggggtgt 228  Q
    |||||||||||||| ||||||||||||||| || ||||||||||||||||||    
T  18872637 ggtcaggtagcctagtggctagaattcaccttaaggtgaataagtggggtgt 18872586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 29096286 - 29096341
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    ||||||||||||| |||||||||||||||  ||| |||||||||||||||||||||    
T  29096286 gtcaggtagcctagtggctagaattcaccttataaggtgaataagtggggtgtccg 29096341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 32158392 - 32158444
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgt 228  Q
    ||||||||||||| |||||||||||||||  ||| ||||||||||||||||||    
T  32158392 gtcaggtagcctagtggctagaattcaccttataaggtgaataagtggggtgt 32158444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 6806618 - 6806673
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    |||||||||||||||||||||||||||||  |||  |||||||||||| |||||||    
T  6806618 gtcaggtagcctaatggctagaattcaccttataatgtgaataagtggagtgtccg 6806673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 9577411 - 9577360
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggt 226  Q
    |||||||||||||| |||||||||||||||  ||| ||||||||||||||||    
T  9577411 ggtcaggtagcctagtggctagaattcaccttataaggtgaataagtggggt 9577360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 29841465 - 29841410
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    ||||||||||||||||||||||||| |||  ||| || ||||||||||||||||||    
T  29841465 gtcaggtagcctaatggctagaatttaccttataaggggaataagtggggtgtccg 29841410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 1244704 - 1244758
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtc 229  Q
    ||||||||| |||| |||||||||||||||  ||| |||||||||||||||||||    
T  1244704 ggtcaggtaacctagtggctagaattcaccttataaggtgaataagtggggtgtc 1244758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 19058982 - 19059036
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtcc 230  Q
    ||||||||| ||| |||||||||||||||  ||| ||||||||||||||||||||    
T  19058982 gtcaggtaggctagtggctagaattcaccttataaggtgaataagtggggtgtcc 19059036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 38618660 - 38618714
Alignment:
Q  179 tcaggtagcctaatggctagaattcaccatat--ggtgaataagtggggtgtccg 231  Q
    |||||||||||| | ||||||||||||| |||  |||||||||||||||||||||    
T  38618660 tcaggtagcctagttgctagaattcaccttataaggtgaataagtggggtgtccg 38618714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 2029106 - 2029158
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgt 228  Q
    ||||| ||||||| |||||||||||||||  ||| ||||||||||||||||||    
T  2029106 gtcagatagcctagtggctagaattcaccttataaggtgaataagtggggtgt 2029158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 20945868 - 20945924
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcaccatat--ggtgaataagtggggtgtccg 231  Q
    |||||||||  ||| ||||||||||||||| |||  |||||||||||||||||||||    
T  20945868 ggtcaggtaatctagtggctagaattcaccttataaggtgaataagtggggtgtccg 20945924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 42455375 - 42455427
Alignment:
Q  181 aggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    |||||||||| |||||||||||||||  ||| ||||||||||||| |||||||    
T  42455375 aggtagcctagtggctagaattcaccttataaggtgaataagtggagtgtccg 42455427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 43166786 - 43166734
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgt 228  Q
    ||||| ||||||| |||||||||||||||  ||| ||||||||||||||||||    
T  43166786 gtcagatagcctagtggctagaattcaccttataaggtgaataagtggggtgt 43166734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 843346 - 843401
Alignment:
Q  178 gtcaggtagcctaatggctagaattca--ccatatggtgaataagtggggtgtccg 231  Q
    ||||||||||||| |||||||||||||    ||| |||||||||||||||||||||    
T  843346 gtcaggtagcctagtggctagaattcaatttataaggtgaataagtggggtgtccg 843401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 24205549 - 24205497
Alignment:
Q  179 tcaggtagcctaatggctagaattcaccatatggtgaataagtggggtgtccg 231  Q
    |||| |||| || ||||||||||||||| || ||| |||||||||||||||||    
T  24205549 tcagatagcatagtggctagaattcaccttaaggtaaataagtggggtgtccg 24205497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 27219546 - 27219593
Alignment:
Q  183 gtagcctaatggctagaattcaccatat--ggtgaataagtggggtgt 228  Q
    |||||||| ||||||||||||||| |||  ||||||||||||||||||    
T  27219546 gtagcctagtggctagaattcaccttattaggtgaataagtggggtgt 27219593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 30403867 - 30403812
Alignment:
Q  178 gtcaggtagcctaatggctagaattcaccatat--ggtgaataagtggggtgtccg 231  Q
    |||||||||| || ||| ||||||||||| |||  |||||||||||||||||||||    
T  30403867 gtcaggtagcttagtggttagaattcaccttataaggtgaataagtggggtgtccg 30403812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 2366474 - 2366421
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtc 229  Q
    |||||||||||||||||||||||||||||  ||| |||||||||||||||||||    
T  2366474 gtcaggtagcctaatggctagaattcaccttataaggtgaataagtggggtgtc 2366421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 231
Target Start/End: Complemental strand, 34948224 - 34948168
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    |||||||||||||| |||||||||||||||  ||| |||||||||||||||||||||    
T  34948224 ggtcaggtagcctagtggctagaattcaccttataaggtgaataagtggggtgtccg 34948168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 45011637 - 45011694
Alignment:
Q  179 tcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccgagg 234  Q
    ||||||| ||||||||||||||||||||  ||| |||||||||||||||| |||||||    
T  45011637 tcaggtaccctaatggctagaattcaccttataaggtgaataagtggggtctccgagg 45011694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 21285334 - 21285386
Alignment:
Q  181 aggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    |||||||||| |||||||||||||||  ||| |||||||||||||||||||||    
T  21285334 aggtagcctagtggctagaattcaccttataaggtgaataagtggggtgtccg 21285386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 29658249 - 29658305
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    ||||| |||||||| |||||||||||||||  ||| |||||||||||||||||||||    
T  29658249 ggtcaagtagcctagtggctagaattcaccttataaggtgaataagtggggtgtccg 29658305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 33202532 - 33202587
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    ||||||||||||| |||||||||||||||  ||| | |||||||||||||||||||    
T  33202532 gtcaggtagcctagtggctagaattcaccttataagatgaataagtggggtgtccg 33202587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 37129340 - 37129395
Alignment:
Q  181 aggtagcctaatggctagaattcaccatat--ggtgaataagtggggtgtccgagg 234  Q
    |||||||||| ||||||||||| ||| |||  ||||||||||||||||||||||||    
T  37129340 aggtagcctactggctagaatttaccttataaggtgaataagtggggtgtccgagg 37129395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 45198077 - 45198131
Alignment:
Q  179 tcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    |||||||| |||||||||||||||||||  ||| ||||||||| |||||||||||    
T  45198077 tcaggtagtctaatggctagaattcaccttataaggtgaataaatggggtgtccg 45198131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 27907874 - 27907931
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccgag 233  Q
    ||||||||||||| |||||| ||||||||  ||| | |||||||||||||||||||||    
T  27907874 gtcaggtagcctagtggctaaaattcaccttataagatgaataagtggggtgtccgag 27907931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 231
Target Start/End: Complemental strand, 38451981 - 38451925
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    |||||||||| ||| |||||||||||||||  |||  ||||||||||||||||||||    
T  38451981 ggtcaggtagtctagtggctagaattcaccttataatgtgaataagtggggtgtccg 38451925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 4169193 - 4169138
Alignment:
Q  178 gtcaggtagcctaatggctagaattcaccatat--ggtgaataagtggggtgtccg 231  Q
    |||||||| |||| ||||||||||||||  |||  |||||||||||||||||||||    
T  4169193 gtcaggtaacctagtggctagaattcactttataaggtgaataagtggggtgtccg 4169138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 14102578 - 14102523
Alignment:
Q  178 gtcaggtagcctaatggctagaattcaccatat--ggtgaataagtggggtgtccg 231  Q
    ||||||||||||| | | ||||||||||| |||  |||||||||||||||||||||    
T  14102578 gtcaggtagcctagtagttagaattcaccttataaggtgaataagtggggtgtccg 14102523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 14412595 - 14412540
Alignment:
Q  178 gtcaggtagcctaatggctagaattcaccatat--ggtgaataagtggggtgtccg 231  Q
    ||||||||||||| | | ||||||||||| |||  |||||||||||||||||||||    
T  14412595 gtcaggtagcctagtagttagaattcaccttataaggtgaataagtggggtgtccg 14412540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 22706006 - 22706061
Alignment:
Q  178 gtcaggtagcctaatggctagaattcaccatat--ggtgaataagtggggtgtccg 231  Q
    ||||||||||||| | ||||||||||| | |||  |||||||||||||||||||||    
T  22706006 gtcaggtagcctagtagctagaattcatcttataaggtgaataagtggggtgtccg 22706061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 47552330 - 47552275
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    ||||||||||||  |||||||||||||||  ||| ||||||||||| |||||||||    
T  47552330 gtcaggtagcctggtggctagaattcaccttataaggtgaataagtagggtgtccg 47552275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 42762010 - 42762063
Alignment:
Q  178 gtcaggtagcctaatggctagaattcaccatatggtgaataagtggggtgtccg 231  Q
    ||||||||| ||| ||||||||||||||| || |||||||||||||||||||||    
T  42762010 gtcaggtagtctagtggctagaattcaccttaaggtgaataagtggggtgtccg 42762063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 24074624 - 24074565
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccgagg 234  Q
    |||||||||||||| |||||||||||||||  ||| |||||||||||| |||||||||||    
T  24074624 ggtcaggtagcctagtggctagaattcaccttataaggtgaataagtgaggtgtccgagg 24074565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 3379626 - 3379679
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtc 229  Q
    |||||||||| ||||||||||||||||||  ||| |||||||||||||||||||    
T  3379626 gtcaggtagcttaatggctagaattcaccttataaggtgaataagtggggtgtc 3379679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 2376630 - 2376577
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcaccatatggtgaataagtggggtgtccgagg 234  Q
    |||||||||||||||||||||||||||||     ||||||||||||| ||||||||||    
T  2376630 ggtcaggtagcctaatggctagaattcac----aggtgaataagtggagtgtccgagg 2376577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 36359696 - 36359751
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    ||||||||| ||| |||||||||||||||  ||| |||||||||||||||||||||    
T  36359696 gtcaggtagtctagtggctagaattcaccttataaggtgaataagtggggtgtccg 36359751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 43468683 - 43468738
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    ||||| ||||||| |||||||||||||||  ||| |||||||||||||||||||||    
T  43468683 gtcagatagcctagtggctagaattcaccttataaggtgaataagtggggtgtccg 43468738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 7649645 - 7649587
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccgagg 234  Q
    ||||||||||||| |||||||||||||||   || |||||||||||||||||| |||||    
T  7649645 gtcaggtagcctagtggctagaattcaccttgtaaggtgaataagtggggtgttcgagg 7649587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 9525075 - 9525021
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtc 229  Q
    ||||||||||||||| ||||||||||||||  ||| ||||||||||| |||||||    
T  9525075 ggtcaggtagcctaacggctagaattcaccttataaggtgaataagtagggtgtc 9525021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 23857301 - 23857359
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccgagg 234  Q
    ||||||||||||| |||||||||||||||  ||| | ||||||||| ||||||||||||    
T  23857301 gtcaggtagcctagtggctagaattcaccgtataagatgaataagtcgggtgtccgagg 23857359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 24608460 - 24608514
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtc 229  Q
    ||||||||||||||| ||||||||||||||  ||| ||||||||||| |||||||    
T  24608460 ggtcaggtagcctaacggctagaattcaccttataaggtgaataagtagggtgtc 24608514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 14684193 - 14684250
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccga 232  Q
    |||||||||||||| |||||| ||||||||  ||| | ||||||||||||||||||||    
T  14684193 ggtcaggtagcctagtggctataattcaccttataagatgaataagtggggtgtccga 14684250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 27558849 - 27558902
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtc 229  Q
    ||||||||| ||| |||||||||||||||  ||| |||||||||||||||||||    
T  27558849 gtcaggtagactagtggctagaattcacctaataaggtgaataagtggggtgtc 27558902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 34183034 - 34182984
Alignment:
Q  179 tcaggtagcctaatggctagaattcaccatatggtgaataagtggggtgtc 229  Q
    |||||||| ||||||| ||||||||| | || |||||||||||||||||||    
T  34183034 tcaggtaggctaatgggtagaattcatcttaaggtgaataagtggggtgtc 34182984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 4798518 - 4798574
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    |||||||||| ||| |||||||||||||||  | | |||||||||||||||||||||    
T  4798518 ggtcaggtagtctagtggctagaattcaccttacaaggtgaataagtggggtgtccg 4798574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 33570421 - 33570465
Alignment:
Q  192 tggctagaattcaccatat--ggtgaataagtggggtgtccgagg 234  Q
    ||||||||||||||| |||  ||||||||||||||||||||||||    
T  33570421 tggctagaattcaccttataaggtgaataagtggggtgtccgagg 33570465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 10184779 - 10184834
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    ||||||||| |||||||||||||||||||  ||| ||||||||| ||| |||||||    
T  10184779 gtcaggtagtctaatggctagaattcaccttataaggtgaataaatggagtgtccg 10184834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 231
Target Start/End: Complemental strand, 33206875 - 33206819
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    |||||||||||||| |||||||||||||||  ||| |||||||||||||||||||||    
T  33206875 ggtcaggtagcctagtggctagaattcaccttataaggtgaataagtggggtgtccg 33206819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 46328901 - 46328957
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    |||||||||||||| |||||||||||||||  ||| |||||||||||||||||||||    
T  46328901 ggtcaggtagcctagtggctagaattcaccttataaggtgaataagtggggtgtccg 46328957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 34344756 - 34344811
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    ||||||||||||| |||||||||||||||  ||| |||||||||||||||||||||    
T  34344756 gtcaggtagcctagtggctagaattcaccttataaggtgaataagtggggtgtccg 34344811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 43566773 - 43566832
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccgagg 234  Q
    |||||||||||||| |||||||||||||||  ||| ||||||||||||||||||| ||||    
T  43566773 ggtcaggtagcctagtggctagaattcaccttataaggtgaataagtggggtgtctgagg 43566832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 13539941 - 13539997
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    |||||||||| |||||||||||||||||||  ||| ||| |||||||||||||||||    
T  13539941 ggtcaggtagtctaatggctagaattcaccttataaggtaaataagtggggtgtccg 13539997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 231
Target Start/End: Complemental strand, 14417986 - 14417930
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    ||||||||||| || |||||||||||||||  ||| |||||||||||||||||||||    
T  14417986 ggtcaggtagcttagtggctagaattcaccttataaggtgaataagtggggtgtccg 14417930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 35477845 - 35477793
Alignment:
Q  181 aggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    ||||||||||||| ||||||||||||  ||| |||||||||||||||||||||    
T  35477845 aggtagcctaatgactagaattcaccttataaggtgaataagtggggtgtccg 35477793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 53870951 - 53870896
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    |||||||||||||||| ||||||||||||  |||  ||||||||||||||||||||    
T  53870951 gtcaggtagcctaatgactagaattcaccttataatgtgaataagtggggtgtccg 53870896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 24537938 - 24537889
Alignment:
Q  184 tagcctaatggctagaattcaccatat--ggtgaataagtggggtgtccg 231  Q
    |||||||| |||||||||||||| |||  |||||||||||||||||||||    
T  24537938 tagcctaacggctagaattcaccttataaggtgaataagtggggtgtccg 24537889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 43774302 - 43774249
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtc 229  Q
    |||||||| |||| |||||||||||||||  ||| |||||||||||||||||||    
T  43774302 gtcaggtaacctagtggctagaattcaccttataaggtgaataagtggggtgtc 43774249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 47191491 - 47191438
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgt 228  Q
    |||||||||||||| ||||||||||||| |  ||| ||||||||||||||||||    
T  47191491 ggtcaggtagcctagtggctagaattcatcttataaggtgaataagtggggtgt 47191438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 27066724 - 27066672
Alignment:
Q  181 aggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    |||||||||| || ||||||||||||  ||| |||||||||||||||||||||    
T  27066724 aggtagcctagtgactagaattcacctcataaggtgaataagtggggtgtccg 27066672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 17439942 - 17440001
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcaccatat--ggtgaataagtggggtgtccgagg 234  Q
    |||||||||||||| ||| || |||||||| |||  |||||||||||||||| |||||||    
T  17439942 ggtcaggtagcctagtggttaaaattcaccttataaggtgaataagtggggtatccgagg 17440001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 36727440 - 36727499
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcaccatat--ggtgaataagtggggtgtccgagg 234  Q
    ||||||||| | || ||||||||||||||| |||  | ||||||||||||||||||||||    
T  36727440 ggtcaggtaacttagtggctagaattcaccttataagatgaataagtggggtgtccgagg 36727499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 42832040 - 42832095
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    ||||||||||||| |||||||||||||||  ||| ||||||||| ||| |||||||    
T  42832040 gtcaggtagcctagtggctagaattcaccttataaggtgaataaatggagtgtccg 42832095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 45713597 - 45713542
Alignment:
Q  178 gtcaggtagcctaatggctagaattcaccatat--ggtgaataagtggggtgtccg 231  Q
    ||||||||||||| | | ||||||||||| |||  |||||||||||||||||||||    
T  45713597 gtcaggtagcctagtagttagaattcaccttataaggtgaataagtggggtgtccg 45713542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 30152231 - 30152176
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    ||||||||||||| |||||||||||||||  ||| |||||||||||||||||||||    
T  30152231 gtcaggtagcctattggctagaattcaccttataaggtgaataagtggggtgtccg 30152176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 44074969 - 44074915
Alignment:
Q  179 tcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    ||||||||||||||||||| ||||||||  ||| |||||||||||||||||||||    
T  44074969 tcaggtagcctaatggctaaaattcaccttataaggtgaataagtggggtgtccg 44074915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 29269292 - 29269348
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcaccatat--ggtgaataagtggggtgtccg 231  Q
    |||||||||||||| |||||| ||||||||||||  | |||||||||||||||||||    
T  29269292 ggtcaggtagcctagtggctaaaattcaccatataagatgaataagtggggtgtccg 29269348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 20753103 - 20753158
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    ||||||||||||| |||||||||||||||  ||| |||||||||||| ||||||||    
T  20753103 gtcaggtagcctagtggctagaattcaccttataaggtgaataagtgtggtgtccg 20753158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 31578134 - 31578079
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    ||||||||||||| |||||||||||||||  |||  ||||||||||||||||||||    
T  31578134 gtcaggtagcctagtggctagaattcaccttataatgtgaataagtggggtgtccg 31578079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 30295631 - 30295577
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtc 229  Q
    |||||||||||||| |||||||||||||||   || |||||||||||||||||||    
T  30295631 ggtcaggtagcctagtggctagaattcaccttctaaggtgaataagtggggtgtc 30295577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 30324533 - 30324479
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtc 229  Q
    |||||||||||||| |||||||||||||||   || |||||||||||||||||||    
T  30324533 ggtcaggtagcctagtggctagaattcaccttctaaggtgaataagtggggtgtc 30324479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 12820384 - 12820437
Alignment:
Q  179 tcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtcc 230  Q
    |||| ||||||| |||||||||||||||  ||| ||||||||||||||||||||    
T  12820384 tcagatagcctagtggctagaattcaccttataaggtgaataagtggggtgtcc 12820437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 39992947 - 39992898
Alignment:
Q  183 gtagcctaatggctagaattcaccatat--ggtgaataagtggggtgtcc 230  Q
    |||||||| ||||||||||||||| |||  ||||||||||||||||||||    
T  39992947 gtagcctagtggctagaattcaccttataaggtgaataagtggggtgtcc 39992898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 3465697 - 3465645
Alignment:
Q  181 aggtagcctaatggctagaattcaccatat--ggtgaataagtggggtgtccg 231  Q
    |||||| ||| ||||||||||||||| |||  |||||||||||||||||||||    
T  3465697 aggtagtctagtggctagaattcaccttataaggtgaataagtggggtgtccg 3465645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 17859895 - 17859843
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgt 228  Q
    ||||||||||||| |||||||||||||||  ||| |||||||||||| |||||    
T  17859895 gtcaggtagcctagtggctagaattcaccttataaggtgaataagtgaggtgt 17859843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 28221289 - 28221340
Alignment:
Q  182 ggtagcctaatggctagaattcaccatat--ggtgaataagtggggtgtccg 231  Q
    ||||||||| ||| ||||||||||| |||  |||||||||||||||||||||    
T  28221289 ggtagcctagtggttagaattcaccttataaggtgaataagtggggtgtccg 28221340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 37274697 - 37274642
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    |||||||| |||||||||||||||| |||  ||| | |||||||||||||||||||    
T  37274697 gtcaggtaacctaatggctagaatttaccttataagatgaataagtggggtgtccg 37274642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 41944024 - 41943969
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    |||||||||||||  ||||||||||||||  ||| ||||||||||| |||||||||    
T  41944024 gtcaggtagcctagcggctagaattcaccttataaggtgaataagtagggtgtccg 41943969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 39433475 - 39433417
Alignment:
Q  178 gtcaggtagcctaatggctagaattcaccatat--ggtgaataagtggggtgtccgagg 234  Q
    |||||| |||||| ||||||||||||||| |||  ||||||||||||||||||||||||    
T  39433475 gtcaggcagcctagtggctagaattcaccttataaggtgaataagtggggtgtccgagg 39433417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 15774289 - 15774345
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    ||||||||||| || |||||||||||||||  ||| |||||||||||||||||||||    
T  15774289 ggtcaggtagcttagtggctagaattcaccttataaggtgaataagtggggtgtccg 15774345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 47939176 - 47939232
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    |||||||||||||| ||| |||||||||||  ||| |||||||||||||||||||||    
T  47939176 ggtcaggtagcctagtggttagaattcacctaataaggtgaataagtggggtgtccg 47939232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 3532952 - 3533007
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    ||||||||||||| | |||||||||||||  ||| |||||||||||||||||||||    
T  3532952 gtcaggtagcctagtagctagaattcaccttataaggtgaataagtggggtgtccg 3533007  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 11405573 - 11405518
Alignment:
Q  178 gtcaggtagcctaatggctagaattcaccatat--ggtgaataagtggggtgtccg 231  Q
    |||||||||| || ||||||||||||||| |||  |||||||||||||||||||||    
T  11405573 gtcaggtagcttagtggctagaattcaccttataaggtgaataagtggggtgtccg 11405518  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 19793643 - 19793588
Alignment:
Q  178 gtcaggtagcctaatggctagaattcaccatat--ggtgaataagtggggtgtccg 231  Q
    ||||||||||||| ||| ||||||||||| |||  |||||||||||||||||||||    
T  19793643 gtcaggtagcctagtggttagaattcaccttataaggtgaataagtggggtgtccg 19793588  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 35593880 - 35593825
Alignment:
Q  178 gtcaggtagcctaatggctagaattcaccatat--ggtgaataagtggggtgtccg 231  Q
    |||||||||||||  |||||||||||||| |||  |||||||||||||||||||||    
T  35593880 gtcaggtagcctagcggctagaattcaccttataaggtgaataagtggggtgtccg 35593825  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 37733872 - 37733817
Alignment:
Q  178 gtcaggtagcctaatggctagaattcaccatat--ggtgaataagtggggtgtccg 231  Q
    ||||||||||||| ||| ||||||||||| |||  |||||||||||||||||||||    
T  37733872 gtcaggtagcctagtggttagaattcaccttataaggtgaataagtggggtgtccg 37733817  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 34560316 - 34560374
Alignment:
Q  178 gtcaggtagcctaatggctagaattcaccatat--ggtgaataagtggggtgtccgagg 234  Q
    ||||||||| ||| || |||||||||||| |||  ||||||||||||||||||||||||    
T  34560316 gtcaggtagtctagtgactagaattcaccttataaggtgaataagtggggtgtccgagg 34560374  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 749565 - 749618
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtc 229  Q
    |||||||||||||| |||||||||||| |  ||| |||||||||||||||||||    
T  749565 gtcaggtagcctaacggctagaattcatcttataaggtgaataagtggggtgtc 749618  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 17064245 - 17064298
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtc 229  Q
    ||||||||||||||||| |||||||||||  |||  ||||||||||||||||||    
T  17064245 gtcaggtagcctaatggatagaattcaccttataacgtgaataagtggggtgtc 17064298  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 38019925 - 38019978
Alignment:
Q  178 gtcaggtagcctaatggctagaattcac--catatggtgaataagtggggtgtc 229  Q
    ||||||||||||| ||||||||||||||   ||| |||||||||||||||||||    
T  38019925 gtcaggtagcctagtggctagaattcactttataaggtgaataagtggggtgtc 38019978  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 231
Target Start/End: Complemental strand, 15368923 - 15368867
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    |||||||||||||| |||||||||||||||  |||   |||||||||||||||||||    
T  15368923 ggtcaggtagcctagtggctagaattcaccttataaaatgaataagtggggtgtccg 15368867  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 39994825 - 39994881
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    |||||| ||||||| |||||||||||||||  ||| |||||||||||||| ||||||    
T  39994825 ggtcagatagcctagtggctagaattcaccttataaggtgaataagtgggatgtccg 39994881  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 46116151 - 46116207
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    |||||||||||||| ||| |||||||||||  ||| ||||||||| |||||||||||    
T  46116151 ggtcaggtagcctagtggttagaattcaccttataaggtgaataattggggtgtccg 46116207  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 4354084 - 4354139
Alignment:
Q  179 tcaggtagcctaatggctagaattcaccatat--ggtgaataagtggggtgtccga 232  Q
    |||||||||||  ||||||||||||||  |||  ||||||||||||||||||||||    
T  4354084 tcaggtagcctggtggctagaattcactttataaggtgaataagtggggtgtccga 4354139  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 18923874 - 18923921
Alignment:
Q  189 taatggctagaattcaccatat--ggtgaataagtggggtgtccgagg 234  Q
    |||||||||||||||||| |||  |||||||| |||||||||||||||    
T  18923874 taatggctagaattcaccttataaggtgaatacgtggggtgtccgagg 18923921  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 37491007 - 37490952
Alignment:
Q  178 gtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccg 231  Q
    ||||||||||||| |||||||||||||||  ||| | |||||||| ||||||||||    
T  37491007 gtcaggtagcctagtggctagaattcaccttataagatgaataagcggggtgtccg 37490952  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 39434728 - 39434677
Alignment:
Q  185 agcctaatggctagaattcaccatat--ggtgaataagtggggtgtccgagg 234  Q
    |||||| |||| |||||||||| |||  ||||||||||||||||||||||||    
T  39434728 agcctagtggcaagaattcaccttataaggtgaataagtggggtgtccgagg 39434677  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 42832064 - 42832009
Alignment:
Q  178 gtcaggtagcctaatggctagaattcaccatat--ggtgaataagtggggtgtccg 231  Q
    ||||| ||||||| || |||||||||||| |||  |||||||||||||||||||||    
T  42832064 gtcagatagcctagtgactagaattcaccttataaggtgaataagtggggtgtccg 42832009  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 48110647 - 48110588
Alignment:
Q  177 ggtcaggtagcctaatggctagaattcacc--atatggtgaataagtggggtgtccgagg 234  Q
    |||||||||||||| |||||||| ||||||  ||| | |||||||||| |||||||||||    
T  48110647 ggtcaggtagcctagtggctagatttcaccttataagatgaataagtgaggtgtccgagg 48110588  T

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Target: scaffold1112 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1112
Description:

Target: scaffold1112; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 2419 - 2470
Alignment:
Q  179 tcaggtagcctaatggctagaattcaccatatggtgaataagtggggtgtccg 231  Q
    |||||||||||| |||||| |||||||| || | |||||||||||||||||||    
T  2419 tcaggtagcctagtggctaaaattcacc-taagatgaataagtggggtgtccg 2470  T

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Target: scaffold1086 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1086
Description:

Target: scaffold1086; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 2605 - 2550
Alignment:
Q  178 gtcaggtagcctaatggctagaattcaccatat--ggtgaataagtggggtgtccg 231  Q
    ||||||||| ||| ||||| ||||||||| |||  |||||||||||||||||||||    
T  2605 gtcaggtagtctagtggctggaattcaccttataaggtgaataagtggggtgtccg 2550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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