View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19050_low_60 (Length: 222)
Name: NF19050_low_60
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19050_low_60 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 27 - 203
Target Start/End: Original strand, 30166979 - 30167155
Alignment:
| Q |
27 |
aagacagcaagaagaaaacaagattatgaacaatggcaacatccaagaagttagaccattgaccagaggattaattaaagaacttgcatacatcacatgt |
126 |
Q |
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| T |
30166979 |
aagacagcaagaagaaaacaagattatgaacaatgggaacatccaagaagttagaccattgaccagaggattaattaaagaacttgcatacatcacatgt |
30167078 |
T |
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| Q |
127 |
gggtctcccctaataaaacaaagaggtggaaggaagagaagtgccttatacttaaagagagtttactaaaagacatg |
203 |
Q |
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| T |
30167079 |
gggtctcccctaataaaacaaagaggtggaaggaagagaagtgccttatacttaaagagagtttactaaaagacatg |
30167155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 30006137 - 30006198
Alignment:
| Q |
115 |
tacatcacatgtgggtctcccctaataaaacaaagaggtggaaggaagagaagtgccttata |
176 |
Q |
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| T |
30006137 |
tacatcacatgtgggtcttgcctaataaaacaaagaagtggaaagaagaggagtgctttata |
30006198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 30062827 - 30062888
Alignment:
| Q |
115 |
tacatcacatgtgggtctcccctaataaaacaaagaggtggaaggaagagaagtgccttata |
176 |
Q |
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| T |
30062827 |
tacatcacatgtgggtcttgcctaataaaacaaagaagtggaaagaataggagtgctttata |
30062888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 23 - 122
Target Start/End: Original strand, 18700122 - 18700221
Alignment:
| Q |
23 |
aagaaagacagcaagaagaaaacaagattatgaacaatggcaacatccaagaagttagaccattgaccagaggattaattaaagaacttgcatacatcac |
122 |
Q |
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| T |
18700122 |
aagaaagacagcaagaagaaaacaagattatgaacaatggcaacatccaagaagttagaccattgaccagaggattaattaaagaacttgcttacatcac |
18700221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 18724691 - 18724593
Alignment:
| Q |
23 |
aagaaagacagcaagaagaaaacaagattatgaacaatggcaacatccaagaagttagaccattgaccagaggattaattaaagaacttgcatacatca |
121 |
Q |
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| T |
18724691 |
aagaaagacagcaagaagaaaacaagattatgaacaatggcaacatccaagaagttagaccattgaccagaggattaattaaagaacttgcttacatca |
18724593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 28 - 122
Target Start/End: Original strand, 18680405 - 18680499
Alignment:
| Q |
28 |
agacagcaagaagaaaacaagattatgaacaatggcaacatccaagaagttagaccattgaccagaggattaattaaagaacttgcatacatcac |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
18680405 |
agacagcaagaagaaaacaagattatgaacaatggcaacatccaggaagttagaccattgaccagaggattaattaaagaacttgcttacatcac |
18680499 |
T |
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