View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19050_low_63 (Length: 211)
Name: NF19050_low_63
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19050_low_63 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 7e-85; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 3703229 - 3703048
Alignment:
| Q |
15 |
atgaaccaatggaaatatcgattctgtaaaagaagtgcaagcatgactagccagaagtccttcaagtagac--tgaatgcatatgcacggatagtaaaac |
112 |
Q |
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| T |
3703229 |
atgaaccaatggaaatatcgattctgtaaaagaagtgcaagcatgactagccagaagtctttcaagtagacaatgaatgcatatgcacggatagtaaaac |
3703130 |
T |
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| Q |
113 |
cagccggattttatttgaaatgaaggaaatgttctaatttccacacagcaaaatttgataaataagaagctatacatcgaaa |
194 |
Q |
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| T |
3703129 |
cagccggagtttatttgaaatgaaggaaatgttctaatttccacacagaaaaatttgataaataagaagctatacatcgaaa |
3703048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 3706579 - 3706400
Alignment:
| Q |
17 |
gaaccaatggaaatatcgattctgtaaaagaagtgcaagcatgactagccagaagtccttcaagtagac--tgaatgcatatgcacggatagtaaaacca |
114 |
Q |
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| T |
3706579 |
gaaccaatggaaatatcgat-ctgtaaaagaagtgcaagcatgactagccagaagtctttcaagtagacaatgaatgcatatgcacggatagtaaaacca |
3706481 |
T |
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| Q |
115 |
gccggattttatttgaaatgaaggaaatgttctaatttccacacagcaaaatttgataaa-taagaagctatacatcgaaa |
194 |
Q |
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| T |
3706480 |
gtcagagtttatttgaaatgaaggaaatgttctaatttccacaaagcaaaatttgataaattaagaagctatacgtcgaaa |
3706400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 3714490 - 3714307
Alignment:
| Q |
14 |
gatgaaccaatggaaatatcgattctgtaaaagaagtgcaagcatgactagccagaagtccttcaagtagac--tgaatgcatatgcacggatagtaaaa |
111 |
Q |
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| T |
3714490 |
gatgaaccaatagaaatatagattctataaaagaagtgcaagcgtgactagccagaagccagaaaagtagacaatgaatgcatatgcacagatagtaaac |
3714391 |
T |
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| Q |
112 |
ccagccggattttatttgaaatgaaggaaatgttctaatttccacacagcaaaatttgataaa-taagaagctatacatcgaaa |
194 |
Q |
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| T |
3714390 |
cctgcagaagtttatttgaaatgaaggaaatgtcctaatttccacacgacaaaatttgataaattaagaagctatacatcgaaa |
3714307 |
T |
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