View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19050_low_7 (Length: 556)
Name: NF19050_low_7
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19050_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 48706762 - 48706558
Alignment:
| Q |
14 |
ctcttctgcacatctaaatttacaaagagggtaaatgtgatgtacataaaaaacgcgtttgagacagaattaatgatccagcaggtatttcgacaaaccc |
113 |
Q |
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| T |
48706762 |
ctcttctacacatctaaatttacaaagagggtaaatgtgacgtacataaaaaacgcgtttgagacagaattaatgatccagcaggtatttcaacaaaccc |
48706663 |
T |
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| Q |
114 |
cctcaaacttagttaatgatcaacatatacaataaatagaaaactatttctgaaagtcttttgctacttgtgcattttcaaattacccggtgtagatcaa |
213 |
Q |
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| T |
48706662 |
cctcaaacttagttaatgatcaacatatacaataaatagaaaactacttctgaaagtcttttgctacttgtgcattttcaaattacccggtgtagatcaa |
48706563 |
T |
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| Q |
214 |
tcaat |
218 |
Q |
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||||| |
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| T |
48706562 |
tcaat |
48706558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 329 - 493
Target Start/End: Complemental strand, 48706407 - 48706243
Alignment:
| Q |
329 |
aaacacaagaataaattacaagtgtggtatcacctcaagtattgttcaatacattctttcaattttcataaactcacaggttttgaaacatgtgaaattg |
428 |
Q |
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| T |
48706407 |
aaacacaagaataaattacaagtgtggtatcacctcaagtattgttcaatacattctttcaattttcataaactcacaggttttgaaacatatgaaattg |
48706308 |
T |
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| Q |
429 |
taccattagcaaaacactctccgacaaaacatcagctgtcaatgaactctgtatattttattgtc |
493 |
Q |
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| T |
48706307 |
taccattagcgaaacactctccgacaaaacattagctatcaatgaactctgtatattttattgtc |
48706243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 22 - 218
Target Start/End: Complemental strand, 48710090 - 48709899
Alignment:
| Q |
22 |
cacatctaaatttacaaagagggtaaatgtgatgtacataaaaaacgcgtttgagacagaattaatgatccagcaggtatttcgacaaaccccctcaaac |
121 |
Q |
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| T |
48710090 |
cacatttacatttacacagagtgtaaatgtgatgta--taaaaaatcagtttgagacaaaattaatgatccag---gtatttcgagaaaccccctcaaac |
48709996 |
T |
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| Q |
122 |
ttagttaatgatcaacatatacaataaatagaaaactatttctgaaagtcttttgctacttgtgcattttcaaattacccggtgtagatcaatcaat |
218 |
Q |
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| T |
48709995 |
ttagttaatgatcgacatatacaataaacaaaaaactacttgcgaaagtcttttgttacttgtgcattttcaaattaccaagtgtagatcaatcaat |
48709899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 333 - 448
Target Start/End: Complemental strand, 48709785 - 48709670
Alignment:
| Q |
333 |
acaagaataaattacaagtgtggtatcacctcaagtattgttcaatacattctttcaattttcataaactcacaggttttgaaacatgtgaaattgtacc |
432 |
Q |
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||||||| |||||| ||| | |||||||||| ||||||| ||| |||| |||| |||||||||||||||||||||||||| |||||| ||| ||||| |
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| T |
48709785 |
acaagaagaaattaaaagggaggtatcaccttaagtattattcgatactttctctcaattttcataaactcacaggttttcaaacatatgagtccgtacc |
48709686 |
T |
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| Q |
433 |
attagcaaaacactct |
448 |
Q |
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| T |
48709685 |
attagcagaacactct |
48709670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 333 - 414
Target Start/End: Complemental strand, 48698406 - 48698325
Alignment:
| Q |
333 |
acaagaataaattacaagtgtggtatcacctcaagtattgttcaatacattctttcaattttcataaactcacaggttttga |
414 |
Q |
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||||||| ||||||||| || |||||||| ||||||||||||||||| ||||||||||||| ||||||| |||||||||| |
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| T |
48698406 |
acaagaagaaattacaaaggtattatcaccttaagtattgttcaatacactctttcaattttcgtaaactcgcaggttttga |
48698325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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