View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19050_low_8 (Length: 550)
Name: NF19050_low_8
Description: NF19050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19050_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 19 - 482
Target Start/End: Original strand, 29200073 - 29200537
Alignment:
| Q |
19 |
gcgacaaaatgttccggttgcaatctaagaatgctgacacagacagggcaccgatacgtagacacaaatatctgnnnnnnntggattaattaatcataat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29200073 |
gcgacaaaatgttccggttgcaatctaagaatgctgacacagacagggcaccgatacgtagacacaaatatctgaaaaaaatggattaattaatcataat |
29200172 |
T |
|
| Q |
119 |
catttctgttggtgtcgtgtctgtgtcaggtcagataccagacacgtcctctatcaaaagtgtcgatgctctaaagattgcaatgtcattgcaatgcctc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29200173 |
catttctgttggtgtcgtgtctgtgtcaggtcagataccagacacgtcctctatcaaaagtgtcgatgctctaaagattgcaatgtcattgcaatgcctc |
29200272 |
T |
|
| Q |
219 |
aaatcatttatgttggggctgtaattgaggttgcggaatacaatttaaaaccacgttctagttttagattctataataatatgaaccaaaaagtgatttt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29200273 |
aaatcatttatgttggggctgtaattgaggttgcggaatacaatttaaaaccacgttctagttttagattctataataatatgaaccaaaaagtgatttt |
29200372 |
T |
|
| Q |
319 |
agattttattgttaaatctacctcagatgtat-tttaatttaatttaattttgcaataaattggttagtgaaatatttcattgttgttcttttttagggg |
417 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29200373 |
agattttattgttaaatctacctcagatgtatctttaatttaatttaattttgcaataaattggttagtgaaatatttcattgttgttcttttttagggg |
29200472 |
T |
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| Q |
418 |
aaaaagttcattggaatcaatccaaatcgttgaaagctcgttcacaactcctcatactggaggtg |
482 |
Q |
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| T |
29200473 |
aaaaagttcattggaatcaatccaaatcgttgaaagctcgttcacaactcctcatactggaggtg |
29200537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 22 - 482
Target Start/End: Complemental strand, 12651815 - 12651354
Alignment:
| Q |
22 |
acaaaatgttccggttgcaatctaagaatgctgacacagacagggcaccgatacgtagacacaaatatctgnnnnnnntggattaattaatcataatcat |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || | | | |||||||||||||||||||||| |
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| T |
12651815 |
acaaaatgttccggttgcaatctaagaatgctgacacagacatggcaccgatacgtagatttaatttttttaaaaaaatggattaattaatcataatcat |
12651716 |
T |
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| Q |
122 |
ttctgttggtgtcgtgtctgtgtcaggtcagataccagacacgtcctctatcaaaagtgtcgatgctctaaagattgcaatgtcattgcaatgcctcaaa |
221 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||| | |
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| T |
12651715 |
ttctgttggtgttgtgtctgtgtctggtcagataccagacacgtcttctatcaaaagtgtcgttgctctaaagattgcaatgtcattgcaatgtctcata |
12651616 |
T |
|
| Q |
222 |
tcatttatgttggggctgtaattgaggttgcggaatacaatttaaaaccacgttctagttttagattctataataatatgaaccaaaaagtgattttaga |
321 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12651615 |
tcatttatgttggggctgtaattgaggtttcggaatacaatttaaaaccacgttctagttttagattctataataatatgaaccaaaaagtgattttaga |
12651516 |
T |
|
| Q |
322 |
ttttattgttaaatctacctcagatgtat-tttaatttaatttaattttgcaataaattggttagtgaaatatttcattgttgttcttttttaggggaaa |
420 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
12651515 |
ttttattgttaaatctacctcagatgtatctttaatttaatttaattttgcaataaattggttagtgaaatatttcattgttgttcttttttagggggaa |
12651416 |
T |
|
| Q |
421 |
aagttcattggaatcaatccaaatcgttgaaagctcgttcacaactcctcatactggaggtg |
482 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12651415 |
aagttcattggaatcaatccaaatcgttgaaagctcgttcacaactcctcatattggaggtg |
12651354 |
T |
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