View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19051_high_3 (Length: 365)
Name: NF19051_high_3
Description: NF19051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19051_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 57 - 345
Target Start/End: Complemental strand, 12176755 - 12176467
Alignment:
| Q |
57 |
ttccaattgtcatggataactctaaatggctgcttggtaatgggagattgattaagttctgggaagatgcttggtatggggaacctctgcatgaaaccct |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12176755 |
ttccaattgtcatggataactctaaatggctgcttggtaatgggagattgattaagttctgggaagatgcttggtgtggggaacctctgcatgaaaccct |
12176656 |
T |
|
| Q |
157 |
taacgttaatcaagacatatatagagaatatcctcagtttgttcatgactacattcaaaacttcagatggcatatacctcaaacaattctggttcagtac |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12176655 |
taacgttaatcaagacatatatagagaatatcctcagtttgttcatgactacattcaaaacttcagatggcatatacctcaaacaattctggttcattac |
12176556 |
T |
|
| Q |
257 |
cctgctctaaagttgcttgctgagaaagttactattccaatggaggacaaagaacacaaactaatttggaatcacaactctaatggaga |
345 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
12176555 |
cctgcgctgaagttgcttgctgagaaagttactattccaatggaggacaaagaagacaaactgatttggaatcacaactctaatggaga |
12176467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 163 - 348
Target Start/End: Original strand, 21049385 - 21049570
Alignment:
| Q |
163 |
taatcaagacatatatagagaatatcctcagtttgttcatgactacattcaaaacttcagatggcatatacctcaaacaattctggttcagtaccctgct |
262 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21049385 |
taatcaagacatatatagagaatatcctaggtttgttcatgactacattcaaaacttcagatggcatatacctcaaacaattctggttcattaccctgcg |
21049484 |
T |
|
| Q |
263 |
ctaaagttgcttgctgagaaagttactattccaatggaggacaaagaacacaaactaatttggaatcacaactctaatggagaatt |
348 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
21049485 |
ctgaagttgcttgctgagaaagttactattccaatggaggacaaagaaaacaaacttatttggaatcacaactctaatggagaatt |
21049570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 279 - 357
Target Start/End: Complemental strand, 13664681 - 13664604
Alignment:
| Q |
279 |
agaaagttactattccaatggaggacaaagaacacaaactaatttggaatcacaactctaatggagaatttgatgatgt |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
13664681 |
agaaagttactattccaatggaggacaaagaagacaaattgatttggaatcacaactccaatggagaa-ttgatgatgt |
13664604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University