View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19051_high_7 (Length: 243)
Name: NF19051_high_7
Description: NF19051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19051_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 2562665 - 2562443
Alignment:
| Q |
1 |
attttagaaacatatctcacacaaactggtggaatctacatgatttgatttaataagagaaagtgtattggaaagggaaggttaaaatgaatgttccagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
2562665 |
attttagaaacatatctcacacaaactcgtggaatc---atgatttgatttaataagagaaagtgtattggaaagggaatgtttaaatgaatgttccagc |
2562569 |
T |
|
| Q |
101 |
actcatctctggttgatagtagattatcataattattttaaactatggtactaatacgaacttcgtaaagtatctatcaattttattgatgattaatata |
200 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2562568 |
actcatctccggttgatagtaggttatcataattattttaaactatggtattaatacgaacttcgtaaagtatctatcaattttatcgatgattaatata |
2562469 |
T |
|
| Q |
201 |
tattggagaacctgattaaccatctt |
226 |
Q |
| |
|
| |||||||||||||||||||||||| |
|
|
| T |
2562468 |
tgttggagaacctgattaaccatctt |
2562443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University